Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 2.9e-41 171.4 84 100.0
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 6.1e-39 163.7 84 96.4
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.0e-37 158.7 84 92.9
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.9e-32 142.1 85 83.5
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.5e-29 132.5 85 77.6
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 1.3e-28 129.4 83 75.9
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 1.1e-27 126.3 85 75.3
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 4.1e-27 124.4 79 78.5
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 1.3e-25 119.4 81 75.3
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 3.6e-23 111.3 72 80.6
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 1.4e-22 109.4 74 73.0
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 9.9e-21 103.2 81 64.2
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 1.4e-19 99.4 82 62.2
PGSC0003DMG400031328 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.0e-17 93.2 80 57.5
Solyc06g065073.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 3.0e-17 91.7 80 57.5
Sopen06g023600 Solanum pennellii HOM05D008200 ORTHO05D010849 3.0e-17 91.7 80 57.5
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 8.6e-17 90.1 65 63.1
Peaxi162Scf00268g00024 Petunia axillaris HOM05D008200 ORTHO05D007342 9.5e-16 86.7 80 51.2
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.6e-15 85.9 60 61.7
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 2.1e-15 85.5 60 65.0
PGSC0003DMG400004548 Solanum tuberosum HOM05D008200 ORTHO05D010849 3.6e-15 84.7 60 63.3
PGSC0003DMG400015289 Solanum tuberosum HOM05D008200 ORTHO05D010849 4.7e-15 84.3 60 65.0
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 6.2e-15 84.0 60 60.0
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 6.2e-15 84.0 60 60.0
Nitab4.5_0006133g0030 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.1e-14 83.2 80 50.0
Solyc03g020060.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.4e-14 82.8 60 61.7
Sopen11g011140 Solanum pennellii HOM05D008200 ORTHO05D010849 1.4e-14 82.8 80 50.0
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 2.4e-14 82.0 80 48.8
CAN.G2197.1 Capsicum annuum HOM05D008200 ORTHO05D010849 4.0e-14 81.3 60 60.0
Solyc11g020990.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 2.0e-13 79.0 80 47.5
Nitab4.5_0014015g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 4.4e-13 77.8 83 43.4
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 3.8e-12 74.7 60 51.7
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 3.8e-12 74.7 75 52.0
PGSC0003DMG400039762 Solanum tuberosum HOM05D008200 ORTHO05D010849 3.8e-12 74.7 61 54.1
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 4.9e-12 74.3 79 48.1
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 8.4e-12 73.6 79 46.8
Nitab4.5_0003324g0100 Nicotiana tabacum HOM05D008200 ORTHO05D010849 8.4e-12 73.6 60 53.3
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 1.1e-11 73.2 79 50.6
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.9e-11 72.4 63 47.6
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.4e-11 72.0 75 45.3
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 4.1e-11 71.2 75 45.3
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 4.1e-11 71.2 75 46.7
CAN.G861.42 Capsicum annuum HOM05D008200 ORTHO05D010849 5.4e-11 70.9 61 49.2
Solyc03g020030.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 5.4e-11 70.9 60 53.3
Solyc03g020040.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 5.4e-11 70.9 60 53.3
Sopen03g029600 Solanum pennellii HOM05D008200 ORTHO05D010849 5.4e-11 70.9 60 53.3
Nitab4.5_0000363g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 9.2e-11 70.1 60 50.0
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 2.1e-10 68.9 76 47.4
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 2.7e-10 68.6 79 48.1
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 3.5e-10 68.2 81 46.9
Peaxi162Scf00798g00320 Petunia axillaris HOM05D008200 ORTHO05D007342 3.5e-10 68.2 83 47.0
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 4.6e-10 67.8 75 44.0
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 6.0e-10 67.4 79 45.6
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 6.0e-10 67.4 79 45.6
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 7.8e-10 67.0 76 46.1
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 7.8e-10 67.0 79 45.6
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.0e-09 66.6 81 45.7
PGSC0003DMG400015287 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.0e-09 66.6 51 56.9
Nitab4.5_0004437g0040 Nicotiana tabacum HOM05D008200 ORTHO05D010849 1.3e-09 66.2 65 36.9
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 2.3e-09 65.5 76 50.0
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 3.0e-09 65.1 76 44.7
Sopen03g029580 Solanum pennellii HOM05D008200 ORTHO05D010849 3.0e-09 65.1 51 54.9
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.9e-09 64.7 79 48.1
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 5.1e-09 64.3 75 48.0
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 5.1e-09 64.3 75 50.7
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.7e-09 63.5 79 45.6
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.5e-08 62.8 73 49.3
Nitab4.5_0010009g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 1.5e-08 62.8 69 34.8
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.9e-08 62.4 73 49.3
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.9e-08 62.4 76 48.7
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.9e-08 62.4 73 49.3
Nitab4.5_0005255g0020 Nicotiana tabacum HOM05D008200 ORTHO05D010849 1.9e-08 62.4 65 38.5
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 1.9e-08 62.4 75 40.0
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.9e-08 62.4 54 53.7
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.5e-08 62.0 79 46.8
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.5e-08 62.0 56 48.2
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 2.5e-08 62.0 75 50.7
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.5e-08 62.0 62 46.8
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 2.5e-08 62.0 76 43.4
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 2.5e-08 62.0 76 39.5
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.3e-08 61.6 75 45.3
Peaxi162Scf00391g00620 Petunia axillaris HOM05D008200 ORTHO05D010849 3.3e-08 61.6 41 63.4
Solyc11g020960.2 Solanum lycopersicum HOM05D008200 ORTHO05D010849 3.3e-08 61.6 81 38.3
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 4.3e-08 61.2 75 45.3
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 4.3e-08 61.2 78 42.3
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 5.6e-08 60.8 75 45.3
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 7.3e-08 60.5 51 54.9
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 9.6e-08 60.1 80 42.5
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.2e-07 59.7 75 48.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.2e-07 59.7 87 40.2
PGSC0003DMG400009267 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.2e-07 59.7 81 39.5
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.8e-07 58.5 76 47.4
Solyc03g020080.4 Solanum lycopersicum HOM05D008200 ORTHO05D010849 3.6e-07 58.2 76 35.5
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 4.7e-07 57.8 75 44.0
Sopen03g029560 Solanum pennellii HOM05D008200 ORTHO05D010849 6.2e-07 57.4 76 35.5
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 8.1e-07 57.0 75 48.0
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 8.1e-07 57.0 72 47.2
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.1e-06 56.6 68 48.5
Solyc03g020070.4 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.1e-06 56.6 76 35.5
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.4e-06 56.2 73 46.6
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.4e-06 56.2 73 46.6
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 1.8e-06 55.8 50 56.0
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 3.1e-06 55.1 83 39.8
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 4.0e-06 54.7 79 45.6
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 4.0e-06 54.7 76 39.5
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 4.0e-06 54.7 76 43.4
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 4.0e-06 54.7 75 48.0
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 4.0e-06 54.7 75 48.0
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 6.9e-06 53.9 79 44.3
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 9.0e-06 53.5 67 46.3
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 9.0e-06 53.5 76 40.8


User provided reference genes

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