Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 7.3e-206 720.3 361 100.0
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.6e-203 711.8 361 98.6
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 4.0e-196 688.0 365 94.5
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 2.7e-176 622.1 363 86.0
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.0e-167 593.6 377 80.6
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.9e-166 589.3 377 80.1
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.2e-160 570.1 363 80.2
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.1e-152 542.7 376 73.7
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 4.7e-152 541.6 376 74.2
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.5e-150 536.6 368 75.5
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 8.5e-146 520.8 364 73.6
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.7e-144 515.8 360 72.5
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 5.4e-132 474.9 369 65.6
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 2.7e-131 472.6 365 66.3
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 2.9e-130 469.2 368 65.5
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.8e-127 459.9 381 64.0
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 9.8e-126 454.1 364 64.6
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.7e-125 452.2 366 63.9
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 1.8e-124 449.9 367 61.6
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 9.2e-124 447.6 368 62.2
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.6e-123 446.8 371 62.5
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 2.7e-123 446.0 382 60.5
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 3.5e-123 445.7 374 61.0
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 7.7e-123 444.5 381 61.9
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.3e-122 443.7 370 61.9
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 2.9e-122 442.6 370 60.0
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 6.6e-122 441.4 371 62.3
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 6.6e-122 441.4 374 60.2
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 8.6e-122 441.0 371 62.0
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.1e-121 440.7 371 61.7
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 3.3e-121 439.1 371 62.0
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 3.6e-120 435.6 361 62.9
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.6e-120 435.6 367 61.3
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 4.7e-120 435.3 374 60.2
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.0e-119 434.1 373 60.9
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.4e-119 433.7 370 61.9
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 1.4e-119 433.7 372 60.8
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 3.0e-119 432.6 379 60.7
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 5.2e-119 431.8 371 61.2
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 6.8e-119 431.4 370 61.1
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.2e-118 430.6 371 61.2
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 2.0e-118 429.9 361 61.2
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.0e-118 429.9 372 61.8
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.4e-118 428.7 378 58.7
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 5.7e-118 428.3 374 59.9
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 5.7e-118 428.3 371 59.8
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 7.5e-118 427.9 372 59.9
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 7.5e-118 427.9 374 59.4
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.9e-117 426.0 366 61.2
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 2.9e-117 426.0 376 60.6
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 4.9e-117 425.2 366 59.6
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.1e-116 424.1 384 58.3
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 4.1e-116 422.2 371 58.5
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 7.0e-116 421.4 379 58.8
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 9.2e-116 421.0 367 59.4
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.6e-115 420.2 368 59.8
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 7.8e-115 417.9 376 59.0
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.0e-114 417.5 361 62.6
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-114 417.5 378 58.2
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 1.3e-114 417.2 353 62.0
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-114 416.8 378 57.9
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.7e-114 416.8 374 59.4
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 1.5e-113 413.7 377 59.4
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.9e-113 413.3 378 57.7
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 2.5e-113 412.9 367 58.9
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 3.6e-112 409.1 370 60.5
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 3.6e-112 409.1 365 60.0
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 4.7e-112 408.7 374 58.3
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.0e-111 407.5 366 59.0
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.4e-111 407.1 377 56.8
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 5.2e-111 405.2 362 59.1
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 2.0e-110 403.3 368 59.0
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 2.0e-110 403.3 379 57.8
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.6e-110 402.9 368 59.0
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 4.4e-110 402.1 368 58.7
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.7e-109 400.2 368 58.7
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.7e-109 400.2 368 58.7
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.7e-109 400.2 377 56.5
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 2.9e-109 399.4 378 56.1
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 3.7e-109 399.1 378 56.1
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 4.9e-109 398.7 374 55.3
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 8.3e-109 397.9 377 56.5
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.4e-108 397.1 356 58.4
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.9e-108 396.7 377 54.9
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.4e-108 396.4 378 55.8
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.4e-108 396.4 368 58.2
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 3.2e-108 396.0 361 59.3
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 5.4e-108 395.2 373 55.0
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 5.4e-108 395.2 373 55.0
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 5.4e-108 395.2 373 55.0
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 4.6e-107 392.1 366 55.5
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.0e-106 391.0 377 53.6
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 3.0e-106 389.4 355 56.3
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.0e-106 388.7 380 55.3
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.3e-105 385.6 380 54.7
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 4.3e-105 385.6 379 55.4
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 9.5e-105 384.4 339 57.8
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 9.5e-105 384.4 339 57.8
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 6.2e-104 381.7 364 56.0
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 6.2e-104 381.7 353 58.1
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.3e-103 379.8 380 54.5
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.5e-94 350.5 378 50.0
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.1e-92 342.4 365 49.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-90 337.0 364 51.4
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.7e-85 320.5 374 48.4
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 2.2e-85 320.1 458 42.6
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 8.4e-85 318.2 370 48.1
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 6.0e-83 312.0 366 47.8
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.6e-80 303.9 308 52.9
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 7.6e-78 295.0 184 77.7
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 4.9e-77 292.4 342 47.4
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.9e-76 290.4 292 51.0
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 8.7e-74 281.6 376 43.4
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 5.6e-73 278.9 356 46.1
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 3.6e-72 276.2 338 43.5
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.5e-70 270.8 364 43.4
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 4.6e-67 259.2 363 40.2
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 2.1e-64 250.4 218 60.6
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 2.8e-64 250.0 377 39.0
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.4e-52 211.1 202 53.5
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.9e-52 210.7 204 48.5
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 9.1e-47 191.8 279 39.8
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 5.0e-45 186.0 176 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.1e-41 174.9 244 40.6
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 5.3e-39 166.0 144 59.0
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.1e-39 165.2 144 57.6
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.3e-37 161.4 165 51.5
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.7e-35 153.7 144 56.9
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 1.0e-34 151.8 290 30.3
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 6.3e-32 142.5 146 50.7
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.2e-27 128.3 107 58.9
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.6e-27 127.9 107 57.9
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.6e-27 127.9 96 63.5
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.2e-26 122.9 107 57.0
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.8e-24 117.1 112 54.5
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.8e-23 114.4 106 56.6
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 1.0e-21 108.6 272 28.7
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 4.7e-19 99.8 230 35.2
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 6.1e-19 99.4 113 45.1
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 6.8e-18 95.9 84 56.0
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 9.1e-15 85.5 90 57.8
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.2e-12 77.0 65 60.0
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 5.5e-12 76.3 65 60.0
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.6e-11 74.7 45 82.2
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 2.8e-11 73.9 84 45.2
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.7e-11 73.2 59 61.0
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 1.4e-10 71.6 106 44.3
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 5.2e-10 69.7 58 60.3
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.5e-09 68.2 99 42.4
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.5e-09 68.2 99 42.4


User provided reference genes

Program Settings