Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g031780.4 Solanum lycopersicum HOM05D029188 ORTHO05D020309 1.2e-228 796.2 424 100.0
Sopen03g005640 Solanum pennellii HOM05D029188 ORTHO05D020309 8.9e-195 683.7 433 88.5
PGSC0003DMG400024070 Solanum tuberosum HOM05D029188 ORTHO05D020309 3.2e-192 675.2 444 82.9
CAN.G404.11 Capsicum annuum HOM05D029188 ORTHO05D020309 7.8e-74 282.0 431 50.3
Nitab4.5_0010745g0010 Nicotiana tabacum HOM05D001861 ORTHO05D020309 9.0e-46 188.7 483 38.1
Peaxi162Scf00155g00022 Petunia axillaris HOM05D001861 ORTHO05D020309 3.8e-44 183.3 447 39.8
Nitab4.5_0000091g0480 Nicotiana tabacum HOM05D001861 ORTHO05D020309 2.5e-40 170.6 469 36.7
GSVIVG01023442001 Vitis vinifera HOM05D001861 ORTHO05D001868 5.3e-22 109.8 289 35.6
Gorai.007G274900 Gossypium raimondii HOM05D001861 ORTHO05D001868 1.0e-17 95.5 277 33.9
QL03p029819 Quercus lobata HOM05D001861 ORTHO05D001868 2.3e-17 94.4 286 32.9
Cc02_g08730 Coffea canephora HOM05D001861 ORTHO05D001868 3.9e-17 93.6 501 28.9
Gohir.D11G256600 Gossypium hirsutum HOM05D001861 ORTHO05D001868 3.9e-17 93.6 277 33.6
Thecc.05G270000 Theobroma cacao HOM05D001861 ORTHO05D001868 2.6e-16 90.9 380 31.3
COL.COLO4_15500 Corchorus olitorius HOM05D001861 ORTHO05D001868 7.4e-16 89.4 238 37.0
Duzib177G0739 Durio zibethinus HOM05D001861 ORTHO05D001868 2.2e-15 87.8 282 35.8
Gohir.A11G246400 Gossypium hirsutum HOM05D001861 ORTHO05D001868 3.7e-15 87.0 369 32.0
FAN09G3342 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.4e-14 85.1 287 35.9
ECA238G0949 Erigeron canadensis HOM05D001861 ORTHO05D001868 3.1e-14 84.0 331 32.0
Manes.08G140100 Manihot esculenta HOM05D001861 ORTHO05D001868 3.1e-14 84.0 379 31.4
FAN05G5582 Fragaria x ananassa HOM05D001861 ORTHO05D001868 4.1e-14 83.6 285 35.8
Lj2A44T76 Lonicera japonica HOM05D001861 ORTHO05D001868 1.2e-13 82.0 311 33.8
Hund06903 Selenicereus undatus HOM05D001861 ORTHO05D001868 3.5e-13 80.5 460 28.3
FAN05G0278 Fragaria x ananassa HOM05D001861 ORTHO05D001868 5.9e-13 79.7 285 35.1
Prupe.6G350800 Prunus persica HOM05D001861 ORTHO05D001868 5.9e-13 79.7 460 29.3
Atru.chr2.1000 Acer truncatum HOM05D001861 ORTHO05D001868 7.7e-13 79.3 290 32.8
MELO3C008695.2 Cucumis melo HOM05D001861 ORTHO05D001868 7.7e-13 79.3 285 31.6
Cfa006362 Carpinus fangiana HOM05D001861 ORTHO05D001868 1.0e-12 79.0 258 36.4
Lj1g0025782 Lotus japonicus HOM05D001861 ORTHO05D001868 1.0e-12 79.0 369 28.5
FAN14G5619 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.3e-12 78.6 288 35.8
PGR004G2436 Punica granatum HOM05D001861 ORTHO05D001868 1.7e-12 78.2 286 32.2
Sed0009743 Sechium edule HOM05D001861 ORTHO05D001868 1.7e-12 78.2 368 30.2
MD12G1249400 Malus domestica HOM05D001861 ORTHO05D001868 2.2e-12 77.8 461 29.3
Haze_04414 Corylus avellana HOM05D001861 ORTHO05D001868 2.9e-12 77.4 307 33.9
FvH4_6g01750 Fragaria vesca HOM05D001861 ORTHO05D001868 2.9e-12 77.4 288 35.8
FAN14G2355 Fragaria x ananassa HOM05D001861 ORTHO05D001868 2.9e-12 77.4 288 35.8
HanXRQChr14g0455311 Helianthus annuus HOM05D001861 ORTHO05D001868 6.5e-12 76.3 284 32.7
Sabra13G0043700 Salix brachista HOM05D001861 ORTHO05D001868 1.1e-11 75.5 277 33.2
CSS0044247 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 1.5e-11 75.1 288 32.6
PSO832G1062 Papaver somniferum HOM05D001861 ORTHO05D001868 2.5e-11 74.3 304 31.9
PSO674G0045 Papaver somniferum HOM05D001861 ORTHO05D001868 4.2e-11 73.6 306 33.3
TAR362G1165 Trochodendron aralioides HOM05D001861 ORTHO05D001868 4.2e-11 73.6 380 29.7
CsaV3_2G009870 Cucumis sativus L. HOM05D001861 ORTHO05D001868 5.5e-11 73.2 373 27.3
Potri.013G047700 Populus trichocarpa HOM05D001861 ORTHO05D001868 7.2e-11 72.8 345 32.2
Nn1g02913 Nelumbo nucifera HOM05D001861 ORTHO05D001868 2.1e-10 71.2 295 30.2
AUR62004829 Chenopodium quinoa HOM05D001861 ORTHO05D001868 6.1e-10 69.7 188 34.6
ClCG11G010520 Citrullus lanatus HOM05D001861 ORTHO05D001868 6.1e-10 69.7 383 26.9
Cpa.g.sc306.5 Carica papaya HOM05D001861 ORTHO05D001868 8.0e-10 69.3 338 29.0
ECA247G2121 Erigeron canadensis HOM05D001861 ORTHO05D001868 1.0e-09 68.9 273 29.7
Eucgr.H04224 Eucalyptus grandis HOM05D001861 ORTHO05D001868 2.3e-09 67.8 279 32.3
TPR.G5651 Trifolium pratense HOM05D001861 ORTHO05D001868 3.0e-09 67.4 275 29.5
EL10Ac4g08993 Beta vulgaris HOM05D001861 ORTHO05D001868 5.2e-09 66.6 455 25.7
TAR365G0301 Trochodendron aralioides HOM05D001861 ORTHO05D001868 5.2e-09 66.6 290 30.7
MD04G1231100 Malus domestica HOM05D001861 ORTHO05D001868 1.1e-08 65.5 368 28.8
CANSAT54G0422 Cannabis sativa HOM05D001861 ORTHO05D001868 1.5e-08 65.1 346 30.6
CiPaw.07G073500 Carya illinoinensis HOM05D001861 ORTHO05D001868 2.6e-08 64.3 241 31.5
Ciclev10021910m.g Citrus clementina HOM05D001861 ORTHO05D001868 2.6e-08 64.3 235 33.2
Glyma.13G125800 Glycine max HOM05D001861 ORTHO05D001099 4.4e-08 63.5 267 31.1
Ca_09656_v3 Cicer arietinum L. HOM05D001861 ORTHO05D001868 7.4e-08 62.8 280 30.4
HanXRQChr14g0454241 Helianthus annuus HOM05D001861 ORTHO05D001868 7.4e-08 62.8 465 27.1
Oeu035746.1 Olea europaea HOM05D001861 ORTHO05D001868 7.4e-08 62.8 477 26.0
Rhsim09G0135500 Rhododendron simsii HOM05D001861 ORTHO05D001868 7.4e-08 62.8 321 30.5
arahy.Tifrunner.gnm1.ann1.1WV257 Arachis hypogaea HOM05D001861 ORTHO05D001868 1.3e-07 62.0 256 34.0
AUR62040915 Chenopodium quinoa HOM05D001861 ORTHO05D001868 1.3e-07 62.0 342 28.1
Glyma.03G166000 Glycine max HOM05D001861 ORTHO05D001868 1.3e-07 62.0 274 29.6
Lj1C72T4 Lonicera japonica HOM05D001861 ORTHO05D001868 1.3e-07 62.0 273 28.9
vmacro02703 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 1.3e-07 62.0 377 26.5
Aqoxy5G00168 Aquilegia oxysepala HOM05D001861 ORTHO05D001868 1.7e-07 61.6 295 31.2
Glyma.19G167200 Glycine max HOM05D001861 ORTHO05D001868 1.7e-07 61.6 280 30.0
QL09p040988 Quercus lobata HOM05D001861 ORTHO05D001868 1.7e-07 61.6 282 28.4
CiPaw.04G189000 Carya illinoinensis HOM05D001861 ORTHO05D001868 2.2e-07 61.2 269 29.0
Actinidia09524 Actinidia chinensis HOM05D001861 ORTHO05D001868 2.8e-07 60.8 280 28.6
VMungo1383G3726 Vigna mungo HOM05D001861 ORTHO05D001868 2.8e-07 60.8 257 31.1
Rhsim09G0135100 Rhododendron simsii HOM05D001861 ORTHO05D001868 3.7e-07 60.5 330 28.2
RcHm_v2.0_Chr3g0449491 Rosa chinensis HOM05D001861 ORTHO05D001868 3.7e-07 60.5 469 27.9
Actinidia30135 Actinidia chinensis HOM05D001861 ORTHO05D001868 4.8e-07 60.1 273 30.0
Actinidia37543 Actinidia chinensis HOM05D001861 ORTHO05D001868 4.8e-07 60.1 347 28.8
arahy.Tifrunner.gnm1.ann1.M57DEN Arachis hypogaea HOM05D001861 ORTHO05D001868 4.8e-07 60.1 270 33.7
Cc01_g17950 Coffea canephora HOM05D001861 ORTHO05D001868 6.3e-07 59.7 283 30.0
RcHm_v2.0_Chr6g0287181 Rosa chinensis HOM05D001861 ORTHO05D001868 6.3e-07 59.7 304 28.0
Sc20g0000700 Simmondsia chinensis HOM05D001861 ORTHO05D001868 8.2e-07 59.3 462 25.3
Psat6g061640 Pisum sativum HOM05D001861 ORTHO05D001868 1.1e-06 58.9 281 28.5
CSS0015268 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 1.8e-06 58.2 461 24.5
HanXRQChr07g0194821 Helianthus annuus HOM05D001861 ORTHO05D001868 3.1e-06 57.4 267 29.2
Lalb_Chr04g0262111 Lupinus albus HOM05D001861 ORTHO05D001868 5.3e-06 56.6 268 28.4
RhsimUnG0083600 Rhododendron simsii HOM05D001861 ORTHO05D001868 5.3e-06 56.6 350 29.4
CiPaw.03G268800 Carya illinoinensis HOM05D001861 ORTHO05D001868 7.0e-06 56.2 277 30.0
Lj5g0016435 Lotus japonicus HOM05D001861 ORTHO05D001868 7.0e-06 56.2 275 29.8
CARHR003380 Cardamine hirsuta HOM05D001861 ORTHO05D001868 9.1e-06 55.8 273 26.4
RhsimUnG0155600 Rhododendron simsii HOM05D001861 ORTHO05D001868 9.1e-06 55.8 230 30.9


User provided reference genes

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