Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.0e-51 204.9 104 100.0
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 6.5e-30 134.0 90 78.9
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 6.0e-28 127.5 89 69.7
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 2.3e-27 125.6 92 70.7
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 5.3e-24 114.4 92 64.1
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 6.9e-24 114.0 93 64.5
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.4e-23 111.7 93 59.1
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 7.6e-23 110.5 89 64.0
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 2.7e-20 102.1 93 58.1
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 3.5e-20 101.7 97 51.5
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 6.1e-20 100.9 95 54.7
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 7.9e-20 100.5 77 58.4
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.3e-19 99.8 96 57.3
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.3e-19 99.8 94 54.3
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.8e-19 99.4 89 53.9
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.8e-19 99.4 86 59.3
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 3.9e-19 98.2 87 56.3
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 5.1e-19 97.8 93 52.7
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 5.1e-19 97.8 77 57.1
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 6.7e-19 97.4 74 60.8
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 8.7e-19 97.1 100 49.0
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.1e-18 96.7 100 50.0
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.1e-18 96.7 97 50.5
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.5e-18 96.3 98 51.0
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.5e-18 96.3 84 53.6
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.9e-18 95.9 84 61.9
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 2.5e-18 95.5 88 53.4
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.5e-18 95.5 89 49.4
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 2.5e-18 95.5 89 50.6
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 4.3e-18 94.7 93 51.6
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 5.7e-18 94.4 63 63.5
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 7.4e-18 94.0 95 51.6
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 7.4e-18 94.0 63 61.9
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 9.7e-18 93.6 89 49.4
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 9.7e-18 93.6 94 45.7
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.6e-17 92.8 94 46.8
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 2.2e-17 92.4 84 53.6
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.8e-17 92.0 97 48.5
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 2.8e-17 92.0 63 58.7
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 3.7e-17 91.7 100 44.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.7e-17 91.7 100 44.0
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 3.7e-17 91.7 90 52.2
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.8e-17 91.3 96 51.0
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.8e-17 91.3 96 51.0
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.8e-17 91.3 96 51.0
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 8.2e-17 90.5 104 46.2
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 8.2e-17 90.5 90 48.9
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.1e-16 90.1 91 48.4
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 1.1e-16 90.1 94 44.7
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.4e-16 89.7 90 48.9
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 1.4e-16 89.7 84 51.2
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.4e-16 89.7 84 51.2
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 2.4e-16 89.0 76 55.3
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 3.1e-16 88.6 91 51.6
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 4.1e-16 88.2 84 50.0
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 9.0e-16 87.0 90 50.0
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 9.0e-16 87.0 93 48.4
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.5e-15 86.3 101 42.6
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 1.5e-15 86.3 97 45.4
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.0e-15 85.9 89 49.4
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.0e-15 85.9 89 49.4
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.6e-15 85.5 86 50.0
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 3.4e-15 85.1 83 50.6
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 3.4e-15 85.1 87 43.7
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 3.4e-15 85.1 85 48.2
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 5.9e-15 84.3 90 48.9
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 5.9e-15 84.3 92 45.7
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 5.9e-15 84.3 84 45.2
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 5.9e-15 84.3 84 51.2
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 7.7e-15 84.0 101 40.6
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.0e-14 83.6 87 46.0
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.0e-14 83.6 89 47.2
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 1.0e-14 83.6 90 47.8
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.7e-14 82.8 90 46.7
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 2.2e-14 82.4 92 47.8
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 2.9e-14 82.0 83 49.4
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.9e-14 82.0 93 43.0
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.9e-14 82.0 86 45.3
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 2.9e-14 82.0 90 50.0
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 5.0e-14 81.3 87 43.7
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 6.5e-14 80.9 63 54.0
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 6.5e-14 80.9 90 42.2
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 8.5e-14 80.5 93 39.8
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-13 80.1 85 42.4
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.1e-13 80.1 63 54.0
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.4e-13 79.7 84 46.4
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 1.4e-13 79.7 83 49.4
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.9e-13 79.3 94 43.6
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.9e-13 79.3 53 62.3
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.9e-13 79.3 87 49.4
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 2.5e-13 79.0 88 45.5
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 2.5e-13 79.0 88 45.5
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 2.5e-13 79.0 88 47.7
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.5e-13 79.0 89 44.9
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 3.2e-13 78.6 63 52.4
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 3.2e-13 78.6 94 45.7
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 4.2e-13 78.2 90 46.7
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 5.5e-13 77.8 89 40.4
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 5.5e-13 77.8 82 47.6
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 7.2e-13 77.4 89 40.4
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 7.2e-13 77.4 81 46.9
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 7.2e-13 77.4 81 46.9
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 9.4e-13 77.0 89 40.4
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 9.4e-13 77.0 89 40.4
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 9.4e-13 77.0 89 40.4
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-12 76.6 87 43.7
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.6e-12 76.3 81 48.1
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 4.6e-12 74.7 62 51.6
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.0e-11 73.6 90 37.8
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.4e-11 73.2 88 42.0
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.8e-11 72.8 86 46.5
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.0e-11 72.0 88 40.9
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 3.0e-11 72.0 62 48.4
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.0e-11 72.0 97 37.1
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 3.9e-11 71.6 91 39.6
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.1e-11 71.2 91 41.8
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 6.7e-11 70.9 93 43.0
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 8.8e-11 70.5 91 38.5
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.5e-10 68.9 83 39.8
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.3e-10 68.6 91 35.2
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 3.3e-10 68.6 88 38.6
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 3.3e-10 68.6 88 38.6
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 4.3e-10 68.2 89 39.3
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 7.4e-10 67.4 90 37.8
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 9.7e-10 67.0 90 34.4
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 9.7e-10 67.0 90 34.4
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.7e-09 66.2 89 34.8
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.2e-09 65.9 90 36.7
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 2.2e-09 65.9 92 40.2
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.8e-09 65.5 90 35.6
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 4.8e-09 64.7 79 41.8
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 4.8e-09 64.7 60 50.0
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 1.8e-08 62.8 62 46.8
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.2e-06 55.8 91 34.1
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 6.5e-06 54.3 65 41.5


User provided reference genes

Program Settings