Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 1.7e-260 902.1 459 100.0
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 2.6e-256 888.3 459 98.5
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 3.0e-244 848.2 459 94.8
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 7.6e-208 727.2 459 80.6
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 3.3e-203 711.8 460 77.8
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 3.8e-151 538.9 461 60.5
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 3.8e-151 538.9 460 60.4
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.9e-150 536.6 461 60.3
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 1.5e-147 526.9 453 60.0
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 2.0e-147 526.6 456 57.5
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 5.9e-144 515.0 455 56.3
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 1.4e-137 493.8 456 55.0
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 5.4e-137 491.9 456 55.7
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 5.9e-136 488.4 452 54.4
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 1.7e-135 486.9 461 55.1
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 6.6e-135 485.0 456 54.2
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 2.5e-134 483.0 470 52.8
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 6.2e-133 478.4 460 52.8
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 5.8e-131 471.9 459 52.1
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 2.9e-130 469.5 463 51.8
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 3.7e-130 469.2 449 54.1
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 3.5e-128 462.6 412 57.0
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 3.9e-127 459.1 463 51.8
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 6.6e-127 458.4 468 51.7
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 2.5e-126 456.4 468 51.7
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 3.3e-126 456.1 470 51.9
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 5.8e-123 445.3 402 59.0
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 1.7e-122 443.7 470 50.0
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 2.9e-122 443.0 457 51.0
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 4.1e-121 439.1 450 52.4
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 2.1e-120 436.8 408 56.4
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 3.5e-120 436.0 458 50.7
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 4.6e-120 435.6 465 49.9
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 3.9e-119 432.6 411 56.4
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 6.6e-119 431.8 463 49.5
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 8.6e-119 431.4 465 49.2
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 1.1e-118 431.0 479 48.6
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 1.9e-118 430.3 464 48.3
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 3.6e-117 426.0 460 47.4
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 8.1e-117 424.9 476 49.2
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 1.8e-116 423.7 457 49.9
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 5.2e-116 422.2 474 47.3
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 1.3e-114 417.5 462 47.4
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 2.9e-114 416.4 468 47.2
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 6.4e-114 415.2 451 47.0
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 1.9e-113 413.7 474 47.3
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 2.4e-113 413.3 453 47.5
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 7.1e-113 411.8 451 46.6
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 3.5e-112 409.5 449 45.9
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.7e-111 407.1 411 51.3
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 3.9e-111 406.0 451 46.1
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 5.1e-111 405.6 457 49.0
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 1.5e-110 404.1 452 46.5
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 2.5e-110 403.3 451 46.3
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 5.6e-110 402.1 467 46.7
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 7.3e-110 401.7 466 48.1
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 9.6e-110 401.4 453 46.1
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 9.6e-110 401.4 448 47.1
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 1.2e-109 401.0 451 46.8
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 1.2e-109 401.0 451 46.8
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 1.2e-109 401.0 451 46.8
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 4.7e-109 399.1 448 47.3
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 6.2e-109 398.7 451 45.9
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 1.1e-108 397.9 463 48.4
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.8e-108 397.1 461 47.5
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 1.8e-108 397.1 448 49.1
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 9.0e-108 394.8 453 46.8
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 2.0e-107 393.7 469 46.5
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.0e-107 393.7 459 46.6
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 7.6e-107 391.7 461 46.6
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.3e-106 391.0 235 81.3
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 2.2e-106 390.2 452 46.9
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 2.9e-106 389.8 456 47.4
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 8.4e-106 388.3 468 48.1
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 1.1e-105 387.9 444 48.2
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 1.9e-105 387.1 417 49.4
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 1.2e-104 384.4 467 47.5
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 2.1e-104 383.6 465 47.3
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 2.7e-104 383.3 459 44.2
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 7.8e-104 381.7 356 53.4
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 1.2e-99 367.9 441 47.2
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 5.4e-97 359.0 425 46.1
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 1.3e-95 354.4 396 47.7
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 6.7e-95 352.1 409 46.9
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 3.8e-90 336.3 392 48.2
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.2e-89 333.2 368 48.6
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 3.3e-86 323.2 315 59.4
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 4.6e-80 302.8 435 42.1
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 3.0e-79 300.1 598 33.4
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.9e-75 285.8 332 47.3
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 5.5e-73 279.3 461 38.2
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 9.1e-68 261.9 235 54.0
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 4.2e-65 253.1 260 51.5
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 6.5e-58 229.2 530 30.9
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 1.2e-56 224.9 254 46.5
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 3.9e-55 219.9 323 40.9
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.9e-55 219.9 455 33.4
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 1.1e-49 201.8 145 64.8
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 7.5e-46 189.1 470 31.5
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 2.9e-42 177.2 447 32.9
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 5.4e-36 156.4 508 27.0
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 1.0e-34 152.1 452 31.2
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 8.6e-34 149.1 456 29.2
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 1.2e-32 145.2 206 41.3
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 8.9e-31 139.0 150 52.0
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 9.8e-30 135.6 249 34.1
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 1.6e-27 128.3 132 53.0
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 4.5e-27 126.7 123 51.2
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 6.1e-24 116.3 198 37.4
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 5.8e-22 109.8 96 61.5
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 2.3e-18 97.8 176 35.8
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 1.4e-15 88.6 197 31.0
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 6.8e-15 86.3 121 37.2
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 2.2e-13 81.3 108 49.1
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.0e-10 72.4 131 31.3
MCO13G538 Micromonas commoda HOM05D006594 ORTHO05D008383 1.4e-07 62.0 240 24.2


User provided reference genes

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