Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 8.1e-44 179.9 82 100.0
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 8.1e-44 179.9 82 100.0
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 8.1e-44 179.9 82 100.0
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.8e-42 173.7 82 95.1
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.8e-42 173.7 82 95.1
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.2e-39 166.0 83 91.6
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.0e-39 163.7 84 90.5
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 7.8e-39 163.3 82 87.8
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.5e-37 159.1 88 80.7
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.5e-37 159.1 88 80.7
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.3e-36 156.0 83 84.3
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 2.1e-36 155.2 83 83.1
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 2.1e-36 155.2 80 85.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 2.1e-36 155.2 84 83.3
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 2.1e-36 155.2 83 81.9
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 3.6e-36 154.5 86 82.6
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 3.6e-36 154.5 89 78.7
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 4.8e-36 154.1 82 80.5
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 4.8e-36 154.1 86 77.9
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 6.2e-36 153.7 86 79.1
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 6.2e-36 153.7 83 80.7
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.1e-36 153.3 89 78.7
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 8.1e-36 153.3 86 77.9
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-35 152.1 80 78.8
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.8e-35 152.1 80 78.8
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.8e-35 152.1 86 79.1
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 3.1e-35 151.4 81 80.2
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 3.1e-35 151.4 83 78.3
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 3.1e-35 151.4 84 78.6
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 3.1e-35 151.4 81 80.2
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 3.1e-35 151.4 80 83.8
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 3.1e-35 151.4 82 80.5
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.1e-35 151.4 83 78.3
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 4.0e-35 151.0 85 77.6
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 4.0e-35 151.0 89 76.4
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 4.0e-35 151.0 84 78.6
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 5.3e-35 150.6 85 77.6
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 5.3e-35 150.6 84 78.6
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 5.3e-35 150.6 81 81.5
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 6.9e-35 150.2 79 84.8
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.9e-35 150.2 82 79.3
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 9.0e-35 149.8 86 76.7
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 9.0e-35 149.8 84 79.8
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 9.0e-35 149.8 85 78.8
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.2e-34 149.4 84 78.6
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.2e-34 149.4 83 77.1
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.2e-34 149.4 85 76.5
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.5e-34 149.1 81 80.2
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 2.0e-34 148.7 86 75.6
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 2.0e-34 148.7 86 75.6
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.0e-34 148.7 83 79.5
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 2.0e-34 148.7 86 75.6
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 2.6e-34 148.3 79 81.0
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 2.6e-34 148.3 81 79.0
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.6e-34 148.3 89 74.2
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 3.4e-34 147.9 80 78.8
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 3.4e-34 147.9 80 78.8
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 3.4e-34 147.9 81 80.2
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.4e-34 147.9 83 78.3
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.4e-34 147.9 83 78.3
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.4e-34 147.9 83 78.3
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 3.4e-34 147.9 83 78.3
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 4.4e-34 147.5 79 79.7
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 4.4e-34 147.5 86 75.6
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 4.4e-34 147.5 85 78.8
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.4e-34 147.5 84 77.4
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 4.4e-34 147.5 86 75.6
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 4.4e-34 147.5 84 76.2
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 5.8e-34 147.1 78 79.5
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.8e-34 147.1 82 80.5
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 5.8e-34 147.1 82 80.5
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 7.6e-34 146.7 78 79.5
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 9.9e-34 146.4 89 74.2
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.3e-33 146.0 70 87.1
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.7e-33 145.6 81 76.5
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.7e-33 145.6 81 77.8
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.7e-33 145.6 83 78.3
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.7e-33 145.6 85 75.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 2.2e-33 145.2 70 87.1
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 2.2e-33 145.2 81 79.0
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 2.2e-33 145.2 81 79.0
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 3.8e-33 144.4 78 78.2
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.8e-33 144.4 81 79.0
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 8.4e-33 143.3 79 77.2
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 8.4e-33 143.3 81 76.5
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.1e-32 142.9 78 79.5
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-32 142.9 80 77.5
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.1e-32 142.9 77 77.9
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.1e-32 142.9 80 77.5
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.1e-32 142.9 90 76.7
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.4e-32 142.5 81 76.5
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.9e-32 142.1 83 74.7
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.2e-32 141.4 82 74.4
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.2e-32 141.4 88 75.0
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 4.2e-32 141.0 82 74.4
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 4.2e-32 141.0 82 78.0
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 5.4e-32 140.6 80 76.2
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 5.4e-32 140.6 80 76.2
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 7.1e-32 140.2 83 75.9
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 9.3e-32 139.8 78 78.2
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 9.3e-32 139.8 85 72.9
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.2e-31 139.4 81 76.5
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 4.6e-31 137.5 79 74.7
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 7.8e-31 136.7 79 75.9
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.7e-30 135.6 78 76.9
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 3.9e-30 134.4 81 74.1
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 3.9e-30 134.4 109 60.6
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 8.7e-30 133.3 80 73.8
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 5.8e-26 120.6 63 79.4
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.7e-25 119.0 63 79.4
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 3.8e-25 117.9 155 41.9
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.2e-23 112.8 60 88.3
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.8e-22 109.0 80 58.8
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 7.4e-21 103.6 55 78.2
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 7.4e-21 103.6 55 78.2
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 9.6e-21 103.2 62 74.2
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 2.8e-20 101.7 60 76.7
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 2.8e-20 101.7 80 58.8
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 4.8e-20 100.9 62 75.8
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 8.1e-20 100.1 62 72.6
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.4e-19 98.6 62 72.6
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.1e-19 98.2 62 69.4
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 3.1e-19 98.2 58 75.9
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.1e-19 98.2 59 72.9
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 4.0e-19 97.8 66 66.7
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 9.0e-19 96.7 61 68.9
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 2.6e-18 95.1 61 65.6
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 2.6e-18 95.1 57 73.7
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.4e-18 94.7 59 72.9
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 4.5e-18 94.4 55 78.2
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.5e-18 94.4 58 72.4
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 4.5e-18 94.4 55 74.5
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 7.6e-18 93.6 54 74.1
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.7e-17 92.4 53 73.6
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 2.9e-17 91.7 53 73.6
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 2.9e-17 91.7 55 72.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 3.8e-17 91.3 55 74.5
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.9e-17 90.9 65 69.2
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 6.5e-17 90.5 58 72.4
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.4e-16 89.4 60 66.7
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.1e-14 80.9 61 60.7
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 4.8e-12 74.3 65 50.8
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.2e-12 73.9 39 79.5
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.1e-11 73.2 75 49.3
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 9.0e-11 70.1 62 50.0


User provided reference genes

Program Settings