Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 0.0e+00 1340.9 686 100.0
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 0.0e+00 1325.5 686 98.7
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 0.0e+00 1257.3 687 94.8
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 0.0e+00 1082.8 759 76.5
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.5e-305 1050.8 694 79.7
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 1.1e-287 993.0 694 75.4
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 8.0e-286 986.9 694 76.4
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.3e-215 752.3 698 62.0
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.4e-213 746.1 690 61.2
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 6.1e-169 598.6 727 51.9
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 1.2e-167 594.3 714 52.0
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 2.2e-163 580.1 711 50.4
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 3.8e-163 579.3 641 55.5
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 1.4e-157 560.8 718 50.0
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 5.4e-157 558.9 715 49.7
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.2e-156 557.8 737 48.7
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 1.3e-155 554.3 853 44.3
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.7e-155 553.9 696 50.3
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.6e-153 547.4 718 48.3
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 7.8e-148 528.5 706 48.2
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 3.3e-146 523.1 722 47.6
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.4e-143 512.7 722 46.4
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 5.9e-140 502.3 716 46.5
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 7.8e-140 501.9 709 48.0
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.7e-139 500.7 708 46.0
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 8.6e-139 498.4 709 46.5
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 4.3e-138 496.1 715 47.1
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 8.0e-137 491.9 713 47.0
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 1.4e-136 491.1 714 45.2
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 8.9e-136 488.4 703 47.4
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.4e-135 486.1 713 46.4
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 5.8e-135 485.7 717 46.0
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.2e-134 483.8 695 46.8
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 3.2e-133 479.9 716 44.8
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 2.7e-132 476.9 712 45.2
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.3e-131 474.6 719 44.6
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.0e-131 473.4 714 46.9
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.5e-130 471.1 713 46.7
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 3.3e-130 469.9 705 44.4
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 7.3e-130 468.8 713 44.9
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 4.4e-127 459.5 535 53.8
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 5.8e-127 459.1 701 44.2
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 9.9e-127 458.4 707 43.7
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.7e-126 457.6 715 43.2
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.7e-126 457.6 711 44.2
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.9e-126 456.8 697 44.3
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.9e-126 456.8 706 43.3
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 8.3e-126 455.3 724 44.1
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 2.4e-125 453.8 707 45.3
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 2.4e-125 453.8 690 45.8
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 4.1e-125 453.0 716 44.3
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 7.1e-125 452.2 690 44.5
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 9.2e-125 451.8 711 44.7
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.6e-124 451.1 713 43.9
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.6e-124 451.1 688 43.8
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.6e-124 451.1 707 46.0
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 2.1e-124 450.7 734 42.8
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 3.5e-124 449.9 719 44.4
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 6.0e-124 449.1 714 44.3
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 2.3e-123 447.2 777 42.6
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 5.1e-123 446.0 713 43.5
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.1e-123 446.0 697 46.1
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 5.1e-123 446.0 688 43.6
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.9e-122 444.1 706 42.2
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 5.6e-122 442.6 712 43.0
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 9.5e-122 441.8 705 44.3
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 3.6e-121 439.9 711 44.3
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 1.1e-120 438.3 725 42.1
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 2.0e-119 434.1 698 45.6
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.0e-119 434.1 820 39.1
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 2.0e-119 434.1 712 43.4
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.4e-119 433.3 779 40.1
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 1.1e-117 428.3 740 42.0
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 9.2e-117 425.2 674 42.9
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 3.5e-116 423.3 662 45.2
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 4.6e-116 422.9 694 40.6
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.3e-114 416.4 701 43.9
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 2.1e-113 414.1 878 35.9
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 2.1e-113 414.1 709 42.0
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 4.7e-113 412.9 712 39.7
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 6.2e-113 412.5 772 40.7
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 6.2e-113 412.5 699 42.1
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.1e-112 411.8 708 42.1
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 4.9e-110 402.9 626 44.4
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.4e-110 402.5 738 39.8
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.4e-110 402.5 695 44.0
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.9e-109 401.0 698 43.6
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.6e-108 397.9 704 41.9
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 2.1e-108 397.5 706 40.8
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.7e-108 397.1 645 43.3
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.0e-107 393.7 692 42.6
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 3.0e-107 393.7 711 39.7
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.3e-106 389.8 711 41.4
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 5.6e-106 389.4 714 40.2
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 7.3e-106 389.0 716 40.6
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.3e-105 388.3 714 40.3
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 2.8e-105 387.1 727 39.5
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.1e-104 385.2 707 40.3
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.8e-104 384.4 710 40.6
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 6.9e-104 382.5 621 45.7
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 9.0e-104 382.1 634 43.8
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 9.9e-103 378.6 592 43.1
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.3e-102 378.3 726 39.3
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 3.8e-102 376.7 827 38.3
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 3.2e-101 373.6 705 41.3
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 9.6e-98 362.1 655 40.5
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.3e-97 361.7 710 38.9
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 2.8e-97 360.5 624 39.9
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.9e-94 349.7 558 45.5
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 3.2e-93 347.1 806 35.4
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 2.3e-91 340.9 715 39.0
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 3.0e-91 340.5 727 38.9
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.6e-89 334.7 445 48.8
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 2.9e-86 323.9 679 37.1
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 3.2e-85 320.5 700 35.4
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 7.9e-84 315.8 637 38.1
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 1.3e-83 315.1 551 41.4
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 3.0e-83 313.9 429 45.5
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 3.0e-83 313.9 678 36.1
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 5.7e-82 309.7 679 37.0
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 1.6e-81 308.1 671 38.6
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 1.1e-80 305.4 680 36.0
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 5.9e-79 299.7 679 36.4
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 5.9e-79 299.7 680 35.1
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.9e-79 299.7 621 38.2
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 2.2e-78 297.7 684 36.3
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 6.5e-78 296.2 678 35.1
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 8.5e-78 295.8 679 35.8
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 2.5e-77 294.3 680 35.3
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 1.2e-76 292.0 484 41.9
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 2.1e-76 291.2 699 33.2
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 3.6e-76 290.4 680 34.6
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 3.6e-76 290.4 678 34.4
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 1.0e-75 288.9 608 38.5
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 5.1e-75 286.6 534 39.1
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 6.7e-75 286.2 679 34.8
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 1.9e-74 284.6 684 34.8
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 2.5e-74 284.3 690 34.3
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 2.2e-73 281.2 695 34.5
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 8.2e-73 279.3 300 52.3
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.8e-72 278.1 712 34.1
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 5.3e-72 276.6 745 34.4
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.3e-70 271.9 282 57.4
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 1.8e-67 261.5 564 36.7
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 3.9e-67 260.4 580 36.2
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.7e-66 256.5 690 35.7
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 4.2e-61 240.4 281 49.8
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 6.7e-59 233.0 326 45.4
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 2.6e-58 231.1 400 39.5
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.7e-57 228.4 432 42.4
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 4.8e-57 226.9 300 46.7
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.4e-56 224.6 680 31.3
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 7.7e-55 219.5 634 30.8
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 8.8e-51 206.1 225 50.2
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 3.5e-47 194.1 498 37.1
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 2.7e-44 184.5 141 68.8
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.5e-42 178.7 142 67.6
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 8.6e-38 162.9 191 53.9
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.6e-34 151.4 173 51.4
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.4e-32 145.6 267 36.3
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 1.7e-30 138.7 309 37.9
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.1e-29 136.0 444 32.2
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.4e-26 124.4 238 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 1.3e-25 122.5 353 30.6
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.0e-23 113.6 439 31.7
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.7e-22 112.1 151 51.7
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 1.6e-20 105.5 134 53.7
Oeu035062.1 Olea europaea HOM05D003626 ORTHO05D004255 2.1e-20 105.1 183 40.4
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.1e-16 92.8 465 31.2
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.5e-13 81.6 63 65.1
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.6e-12 79.0 62 61.3
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 6.2e-12 77.0 334 29.3
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.4e-10 71.2 121 43.0
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.4e-10 70.9 101 42.6
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.2e-09 68.6 45 66.7
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.4e-08 65.1 201 34.8
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 1.6e-07 62.4 138 32.6
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.0e-07 60.5 56 60.7
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.0e-06 58.2 53 52.8


User provided reference genes

Program Settings