Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.5e-127 459.5 234 100.0
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 2.7e-124 448.7 234 97.9
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 6.1e-121 437.6 234 95.3
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.1e-109 400.2 233 88.0
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.4e-101 371.3 231 82.7
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.5e-100 368.6 231 81.8
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.5e-98 363.2 243 77.4
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.5e-71 273.5 240 64.2
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 7.1e-69 264.6 220 63.2
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.2e-68 263.8 233 62.2
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.9e-67 258.8 214 64.0
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 8.7e-67 257.7 234 59.4
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 4.3e-66 255.4 237 59.1
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.4e-64 250.4 206 64.1
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 2.4e-64 249.6 285 51.9
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 5.3e-64 248.4 234 59.8
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 6.9e-64 248.1 234 59.0
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.2e-63 247.3 220 63.6
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 4.5e-63 245.4 265 55.1
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 4.5e-63 245.4 225 58.2
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.0e-62 244.2 232 59.9
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.0e-62 244.2 229 59.0
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.3e-62 243.8 217 61.3
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.9e-62 242.7 221 57.5
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 3.8e-62 242.3 234 57.3
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 4.9e-62 241.9 225 57.8
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 6.5e-62 241.5 233 56.2
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 6.5e-62 241.5 239 54.4
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 6.5e-62 241.5 221 57.5
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 4.2e-61 238.8 217 58.1
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 5.5e-61 238.4 230 55.7
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 9.3e-61 237.7 242 58.3
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.1e-60 236.5 224 58.0
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.1e-60 236.5 217 59.0
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 3.5e-60 235.7 235 54.9
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 4.6e-60 235.3 221 57.0
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.7e-59 231.1 217 58.1
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 8.7e-59 231.1 219 59.8
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.1e-58 230.7 240 54.6
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.9e-58 229.9 223 60.5
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 4.3e-58 228.8 206 58.3
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.4e-58 228.0 220 59.1
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.6e-57 226.9 214 55.1
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 6.3e-57 224.9 235 57.4
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.2e-57 224.6 240 57.5
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 6.9e-56 221.5 221 56.6
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 9.0e-56 221.1 231 55.8
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.2e-55 220.7 235 51.1
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.5e-55 220.3 209 55.0
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 2.0e-55 219.9 225 53.3
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 2.6e-55 219.5 235 55.7
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 5.9e-55 218.4 238 52.5
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 7.6e-55 218.0 233 53.6
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.3e-54 217.2 200 55.5
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 2.2e-54 216.5 233 53.2
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 5.5e-53 211.8 229 51.5
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 9.3e-53 211.1 226 52.2
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 9.3e-53 211.1 218 52.8
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-52 210.7 223 52.0
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-52 210.7 223 52.0
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-52 210.3 201 56.2
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.1e-52 209.9 226 51.3
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.1e-52 209.9 226 51.3
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.7e-52 209.5 201 56.2
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.7e-52 209.5 221 52.0
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 2.7e-52 209.5 214 56.1
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 3.6e-52 209.1 215 54.4
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.6e-52 208.8 200 54.0
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.1e-52 208.4 226 50.9
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 7.9e-52 208.0 176 60.8
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.3e-51 207.2 154 68.2
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.8e-51 206.8 240 51.7
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 5.1e-51 205.3 249 50.6
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 5.1e-51 205.3 237 49.4
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-50 204.1 225 51.1
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.1e-50 204.1 233 52.4
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 2.5e-50 203.0 236 51.7
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.3e-50 202.6 219 53.4
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.3e-50 202.2 232 50.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 5.7e-50 201.8 232 53.4
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 9.7e-50 201.1 236 50.4
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 9.7e-50 201.1 200 61.5
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.6e-49 200.3 244 49.2
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 2.8e-49 199.5 234 52.1
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.3e-49 198.4 201 53.7
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 6.3e-49 198.4 223 49.3
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-47 194.1 226 49.1
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-46 189.5 202 51.5
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 3.8e-46 189.1 230 49.6
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.1e-45 187.6 213 53.1
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.9e-45 186.8 226 47.8
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 3.2e-45 186.0 243 48.6
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 5.5e-45 185.3 238 47.1
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 7.9e-44 181.4 234 49.1
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.4e-43 180.6 217 51.6
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 3.9e-43 179.1 236 46.2
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.9e-43 179.1 238 46.6
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 9.7e-42 174.5 224 46.9
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 9.7e-42 174.5 121 71.1
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.3e-41 174.1 209 53.6
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 3.1e-40 169.5 218 44.5
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 3.1e-40 169.5 232 46.6
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 6.9e-40 168.3 202 49.5
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 9.1e-40 167.9 140 62.1
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.5e-39 167.2 235 45.5
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.0e-39 166.8 169 55.6
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 2.6e-39 166.4 235 45.5
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 5.9e-39 165.2 185 55.7
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.0e-38 164.5 232 46.6
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.0e-38 164.5 238 43.7
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 8.5e-38 161.4 230 45.2
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.9e-37 160.2 241 44.4
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-37 159.5 173 49.7
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.2e-36 157.5 231 45.5
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 7.9e-36 154.8 227 44.5
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.0e-35 154.5 235 44.3
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 5.2e-35 152.1 140 59.3
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 5.2e-35 152.1 198 43.9
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.7e-35 151.8 222 45.0
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.8e-35 151.4 190 46.3
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 8.8e-35 151.4 168 46.4
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 5.7e-34 148.7 232 44.4
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.3e-33 147.5 239 41.4
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.5e-31 139.0 243 38.7
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 5.9e-31 138.7 246 41.1
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.0e-30 137.9 107 61.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 3.2e-29 132.9 196 40.8
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.2e-29 131.7 99 72.7
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 7.2e-29 131.7 237 40.1
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.2e-28 131.0 200 46.5
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 4.7e-28 129.0 179 43.6
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 6.7e-27 125.2 223 41.7
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.5e-26 124.0 203 37.4
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.7e-25 120.6 156 47.4
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.7e-25 119.4 80 67.5
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 6.3e-25 118.6 172 45.3
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.3e-24 115.5 157 44.6
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-17 94.4 137 42.3
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 2.7e-15 86.7 150 38.7
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 2.7e-15 86.7 155 38.1
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.7e-15 85.1 176 32.4
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-13 80.1 93 45.2
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.2e-12 77.8 159 34.0
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-12 76.6 93 44.1
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.0e-12 75.1 113 43.4
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-11 74.3 116 36.2
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.0e-11 73.2 55 72.7
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-11 72.8 113 42.5
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.0e-11 72.8 39 94.9
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 3.4e-10 69.7 82 47.6
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 2.2e-09 67.0 232 30.2
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.3e-09 65.1 98 42.9
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-08 64.7 90 43.3
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.1e-08 62.8 105 38.1
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 7.0e-08 62.0 90 41.1


User provided reference genes

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