Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 9.8e-97 356.7 167 100.0
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 2.2e-80 302.4 167 87.4
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 2.2e-80 302.4 167 87.4
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 8.4e-80 300.4 167 87.4
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 8.4e-80 300.4 167 87.4
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 8.4e-80 300.4 167 87.4
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 8.4e-80 300.4 167 87.4
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 8.4e-80 300.4 167 87.4
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 8.4e-80 300.4 167 87.4
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.2e-79 298.5 160 87.5
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 3.0e-77 292.0 164 84.8
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 3.0e-77 292.0 164 84.8
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 3.0e-77 292.0 164 84.8
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 3.0e-77 292.0 164 84.8
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 3.0e-77 292.0 164 84.8
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 3.0e-77 292.0 164 84.8
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 3.0e-77 292.0 164 84.8
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 2.1e-75 285.8 164 84.1
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 6.2e-75 284.3 166 82.5
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 6.2e-75 284.3 166 82.5
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 6.2e-75 284.3 166 82.5
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 6.2e-75 284.3 166 82.5
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 6.2e-75 284.3 166 82.5
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 6.2e-75 284.3 166 82.5
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 6.2e-75 284.3 166 82.5
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 8.1e-75 283.9 166 82.5
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 8.1e-75 283.9 166 82.5
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 1.1e-74 283.5 167 81.4
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 1.8e-74 282.7 166 81.9
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 5.2e-74 281.2 167 80.8
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 6.9e-74 280.8 163 82.8
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 6.9e-74 280.8 164 82.9
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 9.0e-74 280.4 164 83.5
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 2.6e-73 278.9 167 80.8
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 3.4e-73 278.5 162 82.1
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 3.4e-73 278.5 162 82.1
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.4e-73 278.5 147 89.1
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 5.8e-73 277.7 156 85.3
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 5.8e-73 277.7 164 82.3
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 7.6e-73 277.3 164 81.1
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 7.6e-73 277.3 164 81.1
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 2.2e-72 275.8 164 81.1
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 6.4e-72 274.2 167 78.4
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-71 273.5 158 83.5
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.1e-71 273.5 158 83.5
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-71 273.5 158 83.5
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-71 273.5 158 83.5
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.4e-71 273.1 158 82.9
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 1.9e-71 272.7 158 82.3
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 1.9e-71 272.7 158 82.3
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 1.9e-71 272.7 158 82.3
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.4e-71 272.3 166 78.3
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.4e-71 272.3 166 78.3
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 9.3e-71 270.4 158 81.6
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 1.6e-70 269.6 166 78.9
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 2.7e-70 268.9 159 82.4
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 2.7e-70 268.9 158 82.3
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 2.7e-70 268.9 158 82.3
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 9.6e-68 260.4 160 76.2
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 4.8e-67 258.1 158 78.5
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 1.1e-66 256.9 164 76.2
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 1.1e-66 256.9 164 76.2
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 5.3e-66 254.6 133 88.7
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 8.4e-64 247.3 128 89.1
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 3.2e-63 245.4 160 78.1
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 1.2e-62 243.4 164 72.0
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.0e-61 240.4 156 75.0
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-61 240.0 131 87.0
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-60 236.9 131 86.3
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-60 236.9 131 86.3
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-60 236.9 131 86.3
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 1.5e-60 236.5 158 74.7
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.3e-59 233.4 160 71.2
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 4.8e-59 231.5 138 81.9
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 6.2e-59 231.1 129 86.0
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 3.8e-56 221.9 164 64.0
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 8.4e-56 220.7 141 79.4
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 3.2e-55 218.8 106 95.3
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 9.3e-55 217.2 107 93.5
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 9.3e-55 217.2 107 93.5
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 3.5e-54 215.3 157 68.8
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.3e-53 212.6 104 94.2
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.6e-51 206.5 154 66.9
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 8.2e-51 204.1 119 81.5
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 1.4e-50 203.4 99 94.9
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-50 202.2 134 74.6
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 9.0e-50 200.7 124 76.6
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 4.5e-49 198.4 130 75.4
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.3e-48 196.8 121 79.3
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 4.9e-48 194.9 112 82.1
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 2.5e-47 192.6 92 94.6
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-47 191.4 94 92.6
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 7.1e-47 191.0 117 78.6
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 7.1e-47 191.0 117 78.6
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.3e-47 190.7 97 90.7
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 1.3e-45 186.8 97 88.7
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 2.3e-45 186.0 92 92.4
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.3e-45 186.0 92 92.4
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.3e-45 186.0 92 92.4
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 3.9e-45 185.3 94 90.4
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 5.1e-45 184.9 94 90.4
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 5.1e-45 184.9 94 90.4
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 8.7e-45 184.1 92 92.4
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 8.7e-45 184.1 92 92.4
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.1e-44 183.7 143 65.0
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 2.5e-44 182.6 94 89.4
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-44 182.2 91 92.3
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.2e-43 179.5 92 90.2
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.2e-43 179.5 110 77.3
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-42 177.2 100 84.0
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 4.1e-42 175.3 90 88.9
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.9e-42 174.5 91 86.8
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 6.9e-42 174.5 98 84.7
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 4.5e-41 171.8 158 57.0
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 4.5e-41 171.8 141 63.8
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.7e-40 169.9 83 92.8
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 2.5e-39 166.0 95 80.0
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 5.5e-39 164.9 157 54.1
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.3e-39 164.1 95 80.0
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 6.1e-38 161.4 101 76.2
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 7.9e-38 161.0 92 79.3
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 1.8e-34 149.8 92 78.3
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 3.1e-34 149.1 91 78.0
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 4.1e-34 148.7 159 52.2
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 4.1e-34 148.7 75 89.3
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-33 147.1 77 90.9
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 2.2e-32 142.9 85 77.6
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.7e-30 135.2 72 86.1
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 6.1e-30 134.8 89 67.4
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.3e-29 132.9 76 81.6
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 5.1e-29 131.7 105 65.7
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 4.4e-28 128.6 65 90.8
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 1.3e-27 127.1 65 87.7
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 1.3e-27 127.1 69 85.5
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 4.8e-27 125.2 70 80.0
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 2.4e-26 122.9 91 63.7
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 2.2e-24 116.3 81 72.8
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 4.2e-23 112.1 55 90.9
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 1.0e-21 107.5 111 55.0
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.1e-20 104.0 72 72.2
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 4.4e-20 102.1 54 88.9
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 5.7e-20 101.7 53 88.7
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-19 100.5 54 87.0
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 1.7e-19 100.1 53 88.7
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 8.2e-19 97.8 52 82.7
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-18 97.4 53 86.8
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 2.0e-17 93.2 129 46.5
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 4.5e-17 92.0 62 72.6
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 4.5e-17 92.0 48 89.6
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 2.2e-16 89.7 45 91.1
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 5.0e-16 88.6 64 62.5
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 5.5e-15 85.1 43 93.0
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 1.2e-14 84.0 47 76.6
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.6e-12 76.3 41 87.8
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 8.2e-11 71.2 31 100.0
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 8.2e-11 71.2 40 87.5
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 1.6e-09 67.0 36 86.1
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 1.6e-09 67.0 47 68.1
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 2.7e-06 56.2 37 73.0


User provided reference genes

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