Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g013610.1 Solanum lycopersicum HOM05D008285 ORTHO05D010431 2.0e-22 108.2 56 100.0
PGSC0003DMG400000878 Solanum tuberosum HOM05D008285 ORTHO05D010431 5.2e-18 93.6 56 89.3
Gohir.1Z049931 Gossypium hirsutum HOM05D008285 ORTHO05D010431 5.4e-15 83.6 53 79.2
Gohir.A02G134106 Gossypium hirsutum HOM05D008285 ORTHO05D010431 5.4e-15 83.6 53 79.2
Gorai.009G442800 Gossypium raimondii HOM05D008285 ORTHO05D010431 5.4e-15 83.6 53 79.2
CARHR282410 Cardamine hirsuta HOM05D008285 ORTHO05D010431 9.2e-15 82.8 52 80.8
Gohir.1Z049481 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.2e-14 82.4 53 79.2
PSO548G0110 Papaver somniferum HOM05D008285 ORTHO05D010431 1.6e-14 82.0 51 84.3
Gohir.A01G140110 Gossypium hirsutum HOM05D008285 ORTHO05D010431 2.0e-14 81.6 53 77.4
Hma1.2p1_0859F.1_g229500 Hydrangea macrophylla HOM05D008285 ORTHO05D010431 2.0e-14 81.6 51 82.4
Nn031s41612 Nelumbo nucifera HOM05D008285 ORTHO05D010431 2.7e-14 81.3 50 84.0
Nn064s42214 Nelumbo nucifera HOM05D008285 ORTHO05D010431 2.7e-14 81.3 50 84.0
SalBow1G4672 Salvia bowleyana HOM05D008285 ORTHO05D010431 4.6e-14 80.5 57 78.9
SalBow1G6462 Salvia bowleyana HOM05D008285 ORTHO05D010431 4.6e-14 80.5 57 78.9
Manes.18G138300 Manihot esculenta HOM05D008285 ORTHO05D010431 6.0e-14 80.1 52 80.8
PSO063G2603 Papaver somniferum HOM05D008285 ORTHO05D010431 6.0e-14 80.1 52 75.0
RcHm_v2.0_CPg0502841 Rosa chinensis HOM05D008285 ORTHO05D010431 6.0e-14 80.1 52 78.8
ATCG01020 Arabidopsis thaliana HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
C09p40390 Brassica napus HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
BolSC29t60502H Brassica oleracea HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
BolSC35t60700H Brassica oleracea HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
BolSC44t60819H Brassica oleracea HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
BraSC103t45425Z Brassica rapa HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
BraSC138t45538Z Brassica rapa HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
BraSC25t45906Z Brassica rapa HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
BraSC59t46547Z Brassica rapa HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
CSS0043912 Camellia sinensis var. sinensis HOM05D008285 ORTHO05D010431 1.0e-13 79.3 51 80.4
Gohir.A12G229600 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.0e-13 79.3 53 75.5
RcHm_v2.0_Chr4g0421191 Rosa chinensis HOM05D008285 ORTHO05D010431 1.0e-13 79.3 52 78.8
HanXRQCPg0580381 Helianthus annuus HOM05D008285 ORTHO05D010431 1.3e-13 79.0 51 80.4
PSO339G5238 Papaver somniferum HOM05D008285 ORTHO05D010431 1.3e-13 79.0 52 73.1
PGR111G0120 Punica granatum HOM05D008285 ORTHO05D010431 1.3e-13 79.0 50 82.0
Nitab4.5_0015353g0010 Nicotiana tabacum HOM05D008285 ORTHO05D010431 1.7e-13 78.6 45 86.7
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.0e-13 77.8 52 75.0
BolC9t56809H Brassica oleracea HOM05D008285 ORTHO05D010431 6.6e-13 76.6 52 76.9
Nn212s45209 Nelumbo nucifera HOM05D008285 ORTHO05D010431 6.6e-13 76.6 51 82.4
C02p28770 Brassica napus HOM05D008285 ORTHO05D010431 8.6e-13 76.3 52 75.0
BolC2t08924H Brassica oleracea HOM05D008285 ORTHO05D010431 8.6e-13 76.3 52 75.0
BolC9t56929H Brassica oleracea HOM05D008285 ORTHO05D010431 1.1e-12 75.9 52 75.0
Nn8g41105 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.9e-12 75.1 50 80.0
CAN.G657.10 Capsicum annuum HOM05D008285 ORTHO05D010431 2.5e-12 74.7 51 74.5
CAN.G1045.12 Capsicum annuum HOM05D008285 ORTHO05D010431 3.3e-12 74.3 56 71.4
CAN.G1045.15 Capsicum annuum HOM05D008285 ORTHO05D010431 3.3e-12 74.3 56 71.4
CAN.G222.14 Capsicum annuum HOM05D008285 ORTHO05D010431 3.3e-12 74.3 56 71.4
CAN.G413.8 Capsicum annuum HOM05D008285 ORTHO05D010431 3.3e-12 74.3 56 71.4
DCAR_032534 Daucus carota HOM05D008285 ORTHO05D010431 4.3e-12 73.9 52 76.9
CAN.G1431.2 Capsicum annuum HOM05D008285 ORTHO05D010431 9.5e-12 72.8 56 69.6
CAN.G965.8 Capsicum annuum HOM05D008285 ORTHO05D010431 1.6e-11 72.0 56 69.6
CAN.G8.24 Capsicum annuum HOM05D008285 ORTHO05D010431 4.7e-11 70.5 56 67.9
Nn1g08636 Nelumbo nucifera HOM05D008285 ORTHO05D010431 4.7e-11 70.5 50 74.0
Aqoxy1G03262 Aquilegia oxysepala HOM05D008285 ORTHO05D010431 8.0e-11 69.7 47 76.6
BolC2t10592H Brassica oleracea HOM05D008285 ORTHO05D010431 8.0e-11 69.7 48 75.0
CAN.G1324.6 Capsicum annuum HOM05D008285 ORTHO05D010431 8.0e-11 69.7 56 67.9
CAN.G213.15 Capsicum annuum HOM05D008285 ORTHO05D010431 4.0e-10 67.4 47 72.3
Lalb_Chr07g0191721 Lupinus albus HOM05D008285 ORTHO05D010431 5.2e-10 67.0 49 73.5
BolSC45t60913H Brassica oleracea HOM05D008285 ORTHO05D010431 6.8e-10 66.6 56 73.2
CAN.G262.5 Capsicum annuum HOM05D008285 ORTHO05D010431 8.9e-10 66.2 52 65.4
Psat5g142800 Pisum sativum HOM05D008285 ORTHO05D010431 8.9e-10 66.2 46 69.6
SGA_v2.0_scaffold36G14477 Striga asiatica HOM05D008285 ORTHO05D010431 2.6e-09 64.7 46 73.9
Potri.009G163200 Populus trichocarpa HOM05D008285 ORTHO05D010431 3.4e-09 64.3 45 73.3
Medtr4g006140 Medicago truncatula HOM05D008285 ORTHO05D010431 5.8e-09 63.5 44 72.7


User provided reference genes

Program Settings