Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-33 144.8 75 100.0
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.1e-10 67.8 45 77.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 4.1e-10 67.8 45 77.8
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 4.1e-10 67.8 45 77.8
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.3e-10 67.4 45 77.8
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 7.0e-10 67.0 45 75.6
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.2e-09 66.2 45 75.6
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.2e-09 66.2 45 75.6
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.6e-09 65.9 45 75.6
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.6e-09 65.9 45 75.6
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.6e-09 65.9 45 75.6
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.6e-09 65.9 45 75.6
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.0e-09 65.5 45 77.8
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-09 65.5 45 75.6
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.0e-09 65.5 45 77.8
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.7e-09 65.1 45 75.6
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 2.7e-09 65.1 45 75.6
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-09 65.1 45 75.6
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-09 65.1 45 75.6
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-09 65.1 45 75.6
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-09 65.1 45 75.6
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.7e-09 65.1 45 75.6
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 4.5e-09 64.3 45 73.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 5.9e-09 63.9 45 75.6
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 5.9e-09 63.9 44 75.0
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 5.9e-09 63.9 45 73.3
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 7.7e-09 63.5 45 71.1
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 7.7e-09 63.5 45 75.6
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.0e-08 63.2 44 75.0
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 1.3e-08 62.8 45 73.3
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.3e-08 62.8 45 71.1
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 8.5e-08 60.1 40 77.5
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 8.5e-08 60.1 42 71.4
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.5e-07 58.5 48 64.6
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 3.2e-07 58.2 45 68.9
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.5e-07 57.4 41 73.2
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 5.5e-07 57.4 45 64.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 9.4e-07 56.6 45 71.1
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 9.4e-07 56.6 45 71.1
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 9.4e-07 56.6 45 71.1
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 9.4e-07 56.6 45 71.1
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 9.4e-07 56.6 45 71.1
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 9.4e-07 56.6 45 71.1
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 2.1e-06 55.5 44 68.2
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 2.7e-06 55.1 46 63.0


User provided reference genes

Program Settings