Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g013090.1 Solanum lycopersicum HOM05D001524 ORTHO05D001392 4.5e-55 217.6 105 100.0
Solyc03g013040.1 Solanum lycopersicum HOM05D001524 ORTHO05D001392 1.2e-31 139.8 128 60.9
CAN.G503.26 Capsicum annuum HOM05D001524 ORTHO05D001392 3.1e-24 115.2 104 61.5
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 2.7e-20 102.1 128 46.1
Nitab4.5_0001143g0050 Nicotiana tabacum HOM05D001524 ORTHO05D001392 3.6e-20 101.7 133 48.1
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.4e-19 99.8 131 48.9
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 4.0e-19 98.2 128 45.3
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 4.0e-19 98.2 128 44.5
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 8.8e-19 97.1 128 44.5
Peaxi162Scf00016g02429 Petunia axillaris HOM05D001524 ORTHO05D001392 9.8e-18 93.6 133 43.6
PGSC0003DMG400025765 Solanum tuberosum HOM05D001524 ORTHO05D001392 1.1e-16 90.1 129 42.6
Solyc01g107540.4 Solanum lycopersicum HOM05D001524 ORTHO05D001392 4.1e-16 88.2 129 41.9
Sopen01g030680 Solanum pennellii HOM05D001524 ORTHO05D001392 4.1e-16 88.2 106 47.2
Peaxi162Scf00016g02428 Petunia axillaris HOM05D001524 ORTHO05D001392 9.1e-16 87.0 128 39.8
Nitab4.5_0011634g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 3.5e-15 85.1 134 42.5
CiPaw.05G012600 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.9e-13 79.3 127 37.8
Ah.01g011010 Amaranthus hybridus HOM05D001524 ORTHO05D001392 2.5e-13 79.0 128 37.5
Oeu037254.1 Olea europaea HOM05D001524 ORTHO05D001392 4.2e-13 78.2 125 38.4
QL11p033248 Quercus lobata HOM05D001524 ORTHO05D001392 5.5e-13 77.8 136 36.8
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 1.2e-12 76.6 120 39.2
CSS0007588 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 1.6e-12 76.3 132 37.9
Nitab4.5_0001143g0020 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.6e-12 76.3 110 42.7
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 1.6e-12 76.3 105 42.9
Cfa004596 Carpinus fangiana HOM05D001524 ORTHO05D001392 2.1e-12 75.9 135 36.3
Ciclev10030248m.g Citrus clementina HOM05D001524 ORTHO05D001392 2.1e-12 75.9 126 39.7
Cfa004595 Carpinus fangiana HOM05D001524 ORTHO05D001392 2.7e-12 75.5 130 36.9
CiPaw.05G012500 Carya illinoinensis HOM05D001524 ORTHO05D001392 3.6e-12 75.1 135 36.3
Cc03_g14200 Coffea canephora HOM05D001524 ORTHO05D001392 3.6e-12 75.1 123 39.0
Oeu044279.1 Olea europaea HOM05D001524 ORTHO05D001392 3.6e-12 75.1 130 41.5
Haze_10192 Corylus avellana HOM05D001524 ORTHO05D001392 4.7e-12 74.7 133 36.8
Migut.N01159 Erythranthe guttata HOM05D001524 ORTHO05D001392 4.7e-12 74.7 132 39.4
Ah.01g018330 Amaranthus hybridus HOM05D001524 ORTHO05D001392 8.0e-12 73.9 117 35.0
Potri.001G299400 Populus trichocarpa HOM05D001524 ORTHO05D001392 8.0e-12 73.9 122 36.9
CiPaw.05G012400 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.0e-11 73.6 132 37.1
Migut.B00394 Erythranthe guttata HOM05D001524 ORTHO05D001392 1.8e-11 72.8 126 38.9
Sabra09G0073000 Salix brachista HOM05D001524 ORTHO05D001392 1.8e-11 72.8 127 37.0
Sabra16G0188000 Salix brachista HOM05D001524 ORTHO05D001392 1.8e-11 72.8 122 37.7
SalBow6G1183 Salvia bowleyana HOM05D001524 ORTHO05D001392 1.8e-11 72.8 129 37.2
AUR62010320 Chenopodium quinoa HOM05D001524 ORTHO05D001392 2.3e-11 72.4 128 32.0
Ciclev10029208m.g Citrus clementina HOM05D001524 ORTHO05D001392 2.3e-11 72.4 122 39.3
Eucgr.G01335 Eucalyptus grandis HOM05D001524 ORTHO05D001392 2.3e-11 72.4 127 33.9
Haze_10193 Corylus avellana HOM05D001524 ORTHO05D001392 3.0e-11 72.0 133 36.1
HanXRQChr03g0070441 Helianthus annuus HOM05D001524 ORTHO05D001392 3.0e-11 72.0 128 37.5
Hma1.2p1_0796F.1_g219310 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 3.0e-11 72.0 128 38.3
MD10G1147400 Malus domestica HOM05D001524 ORTHO05D001392 3.0e-11 72.0 127 37.0
Ah.01g018320 Amaranthus hybridus HOM05D001524 ORTHO05D001392 4.0e-11 71.6 132 32.6
QL11p033339 Quercus lobata HOM05D001524 ORTHO05D001392 4.0e-11 71.6 110 38.2
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 5.2e-11 71.2 128 37.5
MD10G1098800 Malus domestica HOM05D001524 ORTHO05D001392 5.2e-11 71.2 127 37.0
Prupe.8G136100 Prunus persica HOM05D001524 ORTHO05D001392 5.2e-11 71.2 137 36.5
Atru.chr5.2505 Acer truncatum HOM05D001524 ORTHO05D001392 6.8e-11 70.9 137 38.0
Potri.001G299500 Populus trichocarpa HOM05D001524 ORTHO05D001392 6.8e-11 70.9 122 35.2
Atru.chr5.2479 Acer truncatum HOM05D001524 ORTHO05D001392 8.8e-11 70.5 133 37.6
AUR62010321 Chenopodium quinoa HOM05D001524 ORTHO05D001392 8.8e-11 70.5 125 34.4
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 8.8e-11 70.5 128 37.5
Eucgr.G01332 Eucalyptus grandis HOM05D001524 ORTHO05D001392 8.8e-11 70.5 95 36.8
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 8.8e-11 70.5 128 37.5
Dinv42199 Davidia involucrata HOM05D001524 ORTHO05D001392 1.2e-10 70.1 117 36.8
Lj5g0026713 Lotus japonicus HOM05D001524 ORTHO05D001392 1.2e-10 70.1 122 36.9
MD05G1090800 Malus domestica HOM05D001524 ORTHO05D001392 1.2e-10 70.1 128 35.9
Nitab4.5_0001143g0060 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.2e-10 70.1 56 66.1
QL11p033337 Quercus lobata HOM05D001524 ORTHO05D001392 1.2e-10 70.1 128 34.4
AUR62039067 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.5e-10 69.7 125 33.6
Lsat_1_v5_gn_9_112561 Lactuca sativa HOM05D001524 ORTHO05D001392 1.5e-10 69.7 105 39.0
RcHm_v2.0_Chr6g0254831 Rosa chinensis HOM05D001524 ORTHO05D001392 1.5e-10 69.7 133 35.3
TAR628G1720 Trochodendron aralioides HOM05D001524 ORTHO05D001392 1.5e-10 69.7 132 34.8
FAN20G0854 Fragaria x ananassa HOM05D001524 ORTHO05D001392 2.0e-10 69.3 128 35.2
FvH4_2g05020 Fragaria vesca HOM05D001524 ORTHO05D001392 2.6e-10 68.9 133 33.8
CsaV3_7G008230 Cucumis sativus L. HOM05D001524 ORTHO05D001392 3.4e-10 68.6 133 33.1
Atru.chr5.2485 Acer truncatum HOM05D001524 ORTHO05D001392 4.4e-10 68.2 134 36.6
Lj9P323T45 Lonicera japonica HOM05D001524 ORTHO05D001392 4.4e-10 68.2 128 35.9
Manes.07G071148 Manihot esculenta HOM05D001524 ORTHO05D001392 4.4e-10 68.2 127 32.3
Phvul.007G040900 Phaseolus vulgaris HOM05D001524 ORTHO05D001392 4.4e-10 68.2 120 34.2
Rhsim11G0157200 Rhododendron simsii HOM05D001524 ORTHO05D001392 4.4e-10 68.2 129 34.1
TPR.G3271 Trifolium pratense HOM05D001524 ORTHO05D001392 4.4e-10 68.2 122 36.1
Cfa021156 Carpinus fangiana HOM05D001524 ORTHO05D001392 7.5e-10 67.4 134 33.6
Manes.07G071748 Manihot esculenta HOM05D001524 ORTHO05D001392 7.5e-10 67.4 132 30.3
QL11p033208 Quercus lobata HOM05D001524 ORTHO05D001392 7.5e-10 67.4 116 35.3
Actinidia00405 Actinidia chinensis HOM05D001524 ORTHO05D001392 9.8e-10 67.0 110 35.5
Psat6g223280 Pisum sativum HOM05D001524 ORTHO05D001392 9.8e-10 67.0 130 34.6
Prupe.8G136200 Prunus persica HOM05D001524 ORTHO05D001392 9.8e-10 67.0 132 36.4
CSS0019663 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 1.3e-09 66.6 119 36.1
CSS0050176 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 1.3e-09 66.6 130 33.1
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 1.3e-09 66.6 133 34.6
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 1.3e-09 66.6 128 35.9
Lj9C324T3 Lonicera japonica HOM05D001524 ORTHO05D001392 1.7e-09 66.2 133 37.6
Medtr1g107215 Medicago truncatula HOM05D001524 ORTHO05D001392 1.7e-09 66.2 130 33.1
Potri.009G094600 Populus trichocarpa HOM05D001524 ORTHO05D001392 1.7e-09 66.2 122 34.4
QL11p033161 Quercus lobata HOM05D001524 ORTHO05D001392 2.2e-09 65.9 131 31.3
DCAR_021980 Daucus carota HOM05D001524 ORTHO05D001392 2.8e-09 65.5 136 35.3
Dinv15770 Davidia involucrata HOM05D001524 ORTHO05D001392 2.8e-09 65.5 110 37.3
Gohir.A13G044000 Gossypium hirsutum HOM05D001524 ORTHO05D001392 2.8e-09 65.5 127 30.7
ClCG02G006440 Citrullus lanatus HOM05D001524 ORTHO05D001392 3.7e-09 65.1 132 33.3
Rhsim11G0157300 Rhododendron simsii HOM05D001524 ORTHO05D001392 3.7e-09 65.1 129 32.6
Rhsim11G0158700 Rhododendron simsii HOM05D001524 ORTHO05D001392 3.7e-09 65.1 129 34.1
VMungo0720G2936 Vigna mungo HOM05D001524 ORTHO05D001392 3.7e-09 65.1 121 33.9
Eucgr.G01341 Eucalyptus grandis HOM05D001524 ORTHO05D001392 4.9e-09 64.7 128 32.8
Eucgr.H02706 Eucalyptus grandis HOM05D001524 ORTHO05D001392 4.9e-09 64.7 128 32.8
Psat6g217560 Pisum sativum HOM05D001524 ORTHO05D001392 6.3e-09 64.3 126 33.3
Atru.chr5.2495 Acer truncatum HOM05D001524 ORTHO05D001392 8.3e-09 63.9 135 29.6
Cfa004593 Carpinus fangiana HOM05D001524 ORTHO05D001392 8.3e-09 63.9 131 33.6
Gorai.013G047800 Gossypium raimondii HOM05D001524 ORTHO05D001392 8.3e-09 63.9 127 30.7
MBI13_g09222_MAGBIO Magnolia biondii HOM05D001524 ORTHO05D001392 8.3e-09 63.9 126 31.7
Atru.chr3.2811 Acer truncatum HOM05D001524 ORTHO05D001392 1.1e-08 63.5 135 29.6
Atru.chr5.2558 Acer truncatum HOM05D001524 ORTHO05D001392 1.1e-08 63.5 133 35.3
CANSAT25G2328 Cannabis sativa HOM05D001524 ORTHO05D001392 1.1e-08 63.5 129 31.8
Hma1.2p1_0796F.1_g219300 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 1.1e-08 63.5 128 34.4
Nn1g04674 Nelumbo nucifera HOM05D001524 ORTHO05D001392 1.1e-08 63.5 126 34.9
PSO541G3758 Papaver somniferum HOM05D001524 ORTHO05D001392 1.1e-08 63.5 126 35.7
Sed0022824 Sechium edule HOM05D001524 ORTHO05D001392 1.1e-08 63.5 129 32.6
AUR62010322 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.4e-08 63.2 119 31.1
ClCG02G006460 Citrullus lanatus HOM05D001524 ORTHO05D001392 1.4e-08 63.2 129 31.8
Glyma.10G261200 Glycine max HOM05D001524 ORTHO05D001392 1.4e-08 63.2 109 34.9
Nitab4.5_0002647g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.4e-08 63.2 130 36.2
PSO675G1244 Papaver somniferum HOM05D001524 ORTHO05D001392 1.4e-08 63.2 125 34.4
Thecc.02G109400 Theobroma cacao HOM05D001524 ORTHO05D001392 1.4e-08 63.2 128 33.6
Ciclev10029973m.g Citrus clementina HOM05D001524 ORTHO05D001392 1.8e-08 62.8 128 31.2
CANSAT25G1469 Cannabis sativa HOM05D001524 ORTHO05D001392 2.4e-08 62.4 129 31.8
DCAR_021981 Daucus carota HOM05D001524 ORTHO05D001392 2.4e-08 62.4 123 35.0
Eucgr.G01330 Eucalyptus grandis HOM05D001524 ORTHO05D001392 2.4e-08 62.4 123 30.9
Eucgr.H03199 Eucalyptus grandis HOM05D001524 ORTHO05D001392 2.4e-08 62.4 123 30.9
Gohir.D13G042400 Gossypium hirsutum HOM05D001524 ORTHO05D001392 2.4e-08 62.4 127 30.7
Gorai.013G047600 Gossypium raimondii HOM05D001524 ORTHO05D001392 2.4e-08 62.4 127 30.7
Manes.07G071764 Manihot esculenta HOM05D001524 ORTHO05D001392 3.1e-08 62.0 132 32.6
HanXRQChr03g0068671 Helianthus annuus HOM05D001524 ORTHO05D001392 4.1e-08 61.6 119 37.0
Atru.chr3.2819 Acer truncatum HOM05D001524 ORTHO05D001392 5.4e-08 61.2 118 29.7
Atru.chr5.2476 Acer truncatum HOM05D001524 ORTHO05D001392 7.0e-08 60.8 119 30.3
Haze_10191 Corylus avellana HOM05D001524 ORTHO05D001392 7.0e-08 60.8 169 28.4
Dinv15771 Davidia involucrata HOM05D001524 ORTHO05D001392 7.0e-08 60.8 110 34.5
Hma1.2p1_3964F.1_g338080 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 7.0e-08 60.8 106 35.8
Lalb_Chr21g0308301 Lupinus albus HOM05D001524 ORTHO05D001392 9.2e-08 60.5 120 32.5
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 1.2e-07 60.1 132 30.3
PSO541G2964 Papaver somniferum HOM05D001524 ORTHO05D001392 1.2e-07 60.1 125 33.6
Rhsim11G0157100 Rhododendron simsii HOM05D001524 ORTHO05D001392 1.2e-07 60.1 115 33.0
Thecc.02G109700 Theobroma cacao HOM05D001524 ORTHO05D001392 1.2e-07 60.1 125 31.2
VMungo0720G2083 Vigna mungo HOM05D001524 ORTHO05D001392 1.2e-07 60.1 120 35.0
AUR62039066 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.6e-07 59.7 124 30.6
Rhsim11G0158900 Rhododendron simsii HOM05D001524 ORTHO05D001392 1.6e-07 59.7 121 33.1
Sabra09G0072800 Salix brachista HOM05D001524 ORTHO05D001392 1.6e-07 59.7 127 33.9
Glyma.20G130000 Glycine max HOM05D001524 ORTHO05D001392 2.0e-07 59.3 125 32.0
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 2.0e-07 59.3 129 32.6
TWI75G0774 Tripterygium wilfordii HOM05D001524 ORTHO05D001392 2.0e-07 59.3 127 31.5
Zm00001eb221080 Zea mays HOM05D001524 ORTHO05D001392 2.0e-07 59.3 107 30.8
Glyma.20G129900 Glycine max HOM05D001524 ORTHO05D001392 2.7e-07 58.9 105 33.3
Hma1.2p1_1023F.1_g249050 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 2.7e-07 58.9 116 31.0
PGR042G1104 Punica granatum HOM05D001524 ORTHO05D001392 2.7e-07 58.9 128 29.7
TWI79G1228 Tripterygium wilfordii HOM05D001524 ORTHO05D001392 2.7e-07 58.9 128 32.8
CSS0040649 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 3.5e-07 58.5 104 33.7
CsaV3_7G008240 Cucumis sativus L. HOM05D001524 ORTHO05D001392 3.5e-07 58.5 132 31.8
Oeu044276.1 Olea europaea HOM05D001524 ORTHO05D001392 3.5e-07 58.5 124 36.3
Psat7g250880 Pisum sativum HOM05D001524 ORTHO05D001392 3.5e-07 58.5 122 31.1
Atru.chr3.2817 Acer truncatum HOM05D001524 ORTHO05D001392 4.5e-07 58.2 119 30.3
PGR042G2205 Punica granatum HOM05D001524 ORTHO05D001392 5.9e-07 57.8 111 32.4
AL3G46910 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 7.7e-07 57.4 111 33.3
CANSAT25G2456 Cannabis sativa HOM05D001524 ORTHO05D001392 7.7e-07 57.4 130 33.1
DCAR_021979 Daucus carota HOM05D001524 ORTHO05D001392 7.7e-07 57.4 123 29.3
GSVIVG01037910001 Vitis vinifera HOM05D001524 ORTHO05D001392 7.7e-07 57.4 131 32.1
CANSAT25G1296 Cannabis sativa HOM05D001524 ORTHO05D001392 1.0e-06 57.0 130 32.3
MELO3C018484.2 Cucumis melo HOM05D001524 ORTHO05D001392 1.0e-06 57.0 133 32.3
Duzib248G0849 Durio zibethinus HOM05D001524 ORTHO05D001392 1.0e-06 57.0 126 31.0
Phvul.007G041000 Phaseolus vulgaris HOM05D001524 ORTHO05D001392 1.0e-06 57.0 120 30.8
Potri.009G094500 Populus trichocarpa HOM05D001524 ORTHO05D001392 1.0e-06 57.0 122 30.3
MELO3C018483.2 Cucumis melo HOM05D001524 ORTHO05D001392 1.3e-06 56.6 132 30.3
Ciclev10030275m.g Citrus clementina HOM05D001524 ORTHO05D001392 1.7e-06 56.2 133 30.1
COL.COLO4_32581 Corchorus olitorius HOM05D001524 ORTHO05D001392 1.7e-06 56.2 110 28.2
Zm00001eb044960 Zea mays HOM05D001524 ORTHO05D001392 1.7e-06 56.2 117 27.4
Peaxi162Scf00003g02547 Petunia axillaris HOM05D001524 ORTHO05D001392 2.3e-06 55.8 121 33.1
Gohir.D13G043100 Gossypium hirsutum HOM05D001524 ORTHO05D001392 2.9e-06 55.5 105 29.5
Lj9C324T0 Lonicera japonica HOM05D001524 ORTHO05D001392 2.9e-06 55.5 104 34.6
Solyc01g107520.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 2.9e-06 55.5 107 29.9
Eucgr.I01099 Eucalyptus grandis HOM05D001524 ORTHO05D001392 3.8e-06 55.1 129 30.2
Lsat_1_v5_gn_5_115421 Lactuca sativa HOM05D001524 ORTHO05D001392 3.8e-06 55.1 137 32.1
Manes.07G071700 Manihot esculenta HOM05D001524 ORTHO05D001392 3.8e-06 55.1 130 29.2
ClCG02G006450 Citrullus lanatus HOM05D001524 ORTHO05D001392 5.0e-06 54.7 127 28.3
Atru.chr5.2483 Acer truncatum HOM05D001524 ORTHO05D001392 6.6e-06 54.3 114 28.9
AT2G15220 Arabidopsis thaliana HOM05D001524 ORTHO05D001392 6.6e-06 54.3 126 29.4
CSS0032374 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 6.6e-06 54.3 131 32.1
CSS0047320 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 6.6e-06 54.3 123 33.3
Prupe.8G136500 Prunus persica HOM05D001524 ORTHO05D001392 6.6e-06 54.3 120 30.8
Lj1g0018373 Lotus japonicus HOM05D001524 ORTHO05D001392 8.6e-06 53.9 137 25.5
Rhsim11G0158800 Rhododendron simsii HOM05D001524 ORTHO05D001392 8.6e-06 53.9 121 32.2


User provided reference genes

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