Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 4.1e-122 441.4 227 100.0
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 4.3e-119 431.4 227 97.8
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 1.4e-101 373.2 227 83.3
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 9.6e-95 350.5 227 80.6
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 1.1e-87 327.0 178 95.5
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 5.8e-68 261.5 225 63.1
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 5.8e-68 261.5 184 78.3
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 1.9e-66 256.5 227 60.8
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 2.1e-65 253.1 227 60.4
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.1e-63 247.3 180 75.6
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 2.5e-63 246.1 227 61.2
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 1.3e-62 243.8 225 60.0
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 1.8e-61 240.0 230 57.8
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 1.8e-61 240.0 227 58.6
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 2.4e-61 239.6 230 58.7
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 2.4e-61 239.6 225 58.2
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 3.1e-61 239.2 230 59.6
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 6.9e-61 238.0 223 59.2
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 2.0e-60 236.5 226 58.0
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 2.6e-60 236.1 225 58.2
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 7.7e-60 234.6 228 57.9
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 2.9e-59 232.6 225 57.8
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 3.8e-59 232.3 231 58.0
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 6.5e-59 231.5 232 56.5
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 5.5e-58 228.4 226 57.1
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 7.9e-57 224.6 224 56.7
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 5.1e-56 221.9 232 55.6
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 2.0e-55 219.9 227 52.0
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 4.3e-55 218.8 228 55.3
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 7.4e-55 218.0 228 54.8
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 9.7e-55 217.6 231 54.1
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 9.7e-55 217.6 228 55.3
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 9.7e-55 217.6 228 55.3
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 8.2e-54 214.5 221 54.3
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 1.5e-52 210.3 230 52.2
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 1.5e-52 210.3 228 54.8
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 2.0e-52 209.9 226 52.7
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.9e-51 206.1 222 53.6
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.4e-50 203.8 220 53.6
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 1.4e-50 203.8 229 52.0
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 1.4e-50 203.8 227 52.9
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.5e-50 203.0 221 52.5
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 1.6e-49 200.3 222 54.1
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 1.6e-49 200.3 222 49.5
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 2.1e-49 199.9 221 51.6
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.1e-49 199.9 221 53.8
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 2.7e-49 199.5 246 50.0
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 6.1e-49 198.4 226 50.0
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 7.9e-49 198.0 229 50.7
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 7.9e-49 198.0 225 50.7
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 1.0e-48 197.6 220 48.6
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 1.4e-48 197.2 218 50.5
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 1.8e-48 196.8 225 52.4
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 8.8e-48 194.5 226 47.3
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 8.8e-48 194.5 233 45.9
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 4.4e-47 192.2 232 50.4
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 4.4e-47 192.2 224 47.8
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 7.4e-47 191.4 228 50.4
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 9.7e-47 191.0 232 49.6
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 3.7e-46 189.1 274 44.9
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 6.3e-46 188.3 225 48.9
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 8.2e-46 188.0 225 48.4
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 1.8e-45 186.8 228 48.2
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 5.3e-45 185.3 225 49.3
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 7.0e-45 184.9 225 48.0
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.2e-44 184.1 228 46.9
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 1.2e-44 184.1 234 47.4
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 1.5e-44 183.7 228 47.4
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 1.5e-44 183.7 224 47.3
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 1.5e-44 183.7 224 47.8
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 2.0e-44 183.3 225 49.8
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 4.5e-44 182.2 224 46.4
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 7.7e-44 181.4 222 45.5
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 1.0e-43 181.0 232 48.7
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.3e-43 180.6 233 48.1
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 2.2e-43 179.9 232 47.4
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 3.8e-43 179.1 205 51.2
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 3.8e-43 179.1 234 47.0
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 6.5e-43 178.3 227 44.9
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 1.1e-42 177.6 221 47.5
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 2.5e-42 176.4 230 44.8
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 3.2e-42 176.0 227 46.3
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 7.2e-42 174.9 237 42.6
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 3.6e-41 172.6 233 43.8
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 4.7e-41 172.2 231 45.9
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 3.0e-40 169.5 237 43.5
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 1.3e-38 164.1 129 66.7
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 2.2e-38 163.3 231 48.5
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 2.8e-38 162.9 238 41.6
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 3.7e-38 162.5 228 45.6
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 1.8e-37 160.2 128 64.1
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 2.4e-37 159.8 168 53.6
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 7.0e-37 158.3 135 60.0
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 3.5e-36 156.0 226 42.5
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 1.0e-35 154.5 224 44.2
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 2.2e-35 153.3 222 44.1
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 4.2e-34 149.1 224 42.9
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 6.1e-33 145.2 238 39.5
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.0e-32 144.4 241 39.8
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 1.5e-31 140.6 224 41.5
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 3.4e-31 139.4 229 40.2
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 4.4e-31 139.0 237 38.4
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 6.3e-30 135.2 225 39.1
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 1.8e-29 133.7 146 50.0
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 1.5e-26 124.0 125 49.6
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 7.2e-26 121.7 321 33.6
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 2.7e-25 119.8 125 48.0
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 5.6e-18 95.5 244 31.1
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 1.0e-16 91.3 244 28.3
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 2.0e-15 87.0 116 44.0
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 1.3e-14 84.3 53 73.6
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 2.9e-14 83.2 234 29.9
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 1.8e-13 80.5 86 52.3
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 2.7e-12 76.6 104 46.2
SHI16262 Sapria himalayana HOM05D006456 ORTHO05D007588 1.2e-09 67.8 186 32.8
Thhalv10015519m.g Eutrema salsugineum HOM05D000984 ORTHO05D001096 2.8e-09 66.6 78 43.6
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 5.2e-08 62.4 99 44.4
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 1.2e-07 61.2 49 59.2
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 1.5e-07 60.8 93 41.9
CBR_g17172 Chara braunii HOM05D006456 ORTHO05D007588 1.3e-06 57.8 80 36.2


User provided reference genes

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