Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 3.4e-161 571.6 294 100.0
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 4.2e-159 564.7 294 98.6
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 3.1e-146 521.9 292 91.8
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 8.2e-131 470.7 296 81.4
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 9.4e-127 457.2 296 80.4
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.2e-126 456.8 292 80.8
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 4.0e-125 451.8 293 78.5
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.6e-76 289.7 291 55.3
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 4.1e-74 282.3 289 53.6
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 7.1e-74 281.6 293 51.9
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.2e-73 280.8 292 50.0
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.6e-73 280.4 300 50.7
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 6.0e-73 278.5 289 50.9
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.0e-72 277.7 286 52.1
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.0e-72 277.7 290 51.4
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.7e-72 276.9 300 52.3
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.7e-72 276.9 287 53.7
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 3.0e-72 276.2 296 50.3
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.0e-72 276.2 299 50.5
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 6.6e-72 275.0 288 52.8
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 6.6e-72 275.0 299 49.2
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.5e-71 273.9 299 52.2
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 7.3e-71 271.6 291 54.0
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 7.3e-71 271.6 307 50.5
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 2.1e-70 270.0 287 51.9
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 4.7e-70 268.9 294 49.3
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 3.1e-69 266.2 303 49.2
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 3.1e-69 266.2 292 50.7
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.0e-69 265.8 293 50.9
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 5.2e-69 265.4 293 50.9
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 5.2e-69 265.4 299 48.8
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 6.9e-69 265.0 293 53.2
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 5.8e-68 261.9 300 47.7
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.7e-67 260.4 286 49.3
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 2.2e-67 260.0 292 48.6
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 3.8e-67 259.2 289 49.5
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.4e-66 257.3 302 48.0
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 9.3e-66 254.6 286 49.3
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.1e-65 253.4 289 49.1
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 2.1e-65 253.4 295 48.1
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 2.7e-65 253.1 287 52.6
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.7e-65 253.1 287 52.6
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.8e-65 251.5 287 52.3
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.0e-64 251.1 299 47.5
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.3e-64 250.8 303 46.5
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.0e-64 249.6 287 51.9
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.1e-64 248.8 287 51.6
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 6.6e-64 248.4 286 49.3
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 1.1e-63 247.7 292 49.0
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.5e-63 247.3 289 49.5
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-62 244.2 286 48.3
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.3e-62 244.2 295 45.8
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.6e-62 243.8 276 51.1
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 2.1e-62 243.4 287 47.4
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 3.6e-62 242.7 290 46.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 4.8e-62 242.3 331 45.6
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.8e-61 240.4 289 48.1
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 4.0e-61 239.2 289 46.0
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.9e-61 238.4 319 47.0
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 9.0e-61 238.0 253 51.0
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 2.6e-60 236.5 295 46.4
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 7.6e-60 235.0 292 47.3
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 9.9e-60 234.6 293 45.4
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.3e-59 234.2 298 42.3
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 6.4e-59 231.9 165 73.3
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 3.2e-58 229.6 286 45.8
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.3e-56 224.2 291 43.6
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 3.9e-56 222.6 291 44.3
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.5e-55 219.9 266 45.9
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 7.4e-55 218.4 304 43.4
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.6e-54 216.1 205 56.6
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 5.8e-52 208.8 331 38.7
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 6.4e-51 205.3 269 43.5
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 6.4e-51 205.3 295 41.7
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 7.1e-50 201.8 286 41.3
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 9.3e-50 201.4 272 43.0
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.5e-47 193.4 207 49.8
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 4.3e-47 192.6 161 61.5
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.3e-46 191.0 296 40.2
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.7e-46 189.5 284 40.1
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 4.8e-46 189.1 284 40.1
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 8.1e-46 188.3 283 39.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.8e-45 187.2 283 41.3
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 2.0e-44 183.7 287 41.1
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.0e-43 181.4 196 52.6
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.9e-43 179.1 211 49.3
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.4e-42 177.6 234 47.9
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 2.7e-41 173.3 150 60.0
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.5e-41 172.9 201 46.3
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.1e-40 169.1 287 39.7
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.9e-39 167.2 287 38.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 2.5e-39 166.8 214 46.7
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 4.3e-39 166.0 194 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 2.4e-37 160.2 306 31.0
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.0e-35 154.8 242 38.8
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.3e-32 143.7 297 34.3
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.6e-30 137.5 137 51.1
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.2e-30 137.1 212 42.9
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.1e-29 133.3 154 46.8
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 4.1e-29 132.9 227 37.9
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 5.3e-29 132.5 227 39.2
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.5e-28 131.0 200 38.5
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 2.6e-28 130.2 300 33.7
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.5e-28 129.4 268 31.7
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 5.9e-28 129.0 254 33.9
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.3e-27 127.9 227 37.4
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 5.0e-27 125.9 342 29.5
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.5e-26 123.6 237 36.3
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 6.1e-25 119.0 110 57.3
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.8e-24 117.5 93 64.5
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.3e-24 117.1 206 37.4
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.1e-21 108.2 128 48.4
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.4e-21 107.1 107 52.3
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 5.3e-21 105.9 297 29.0
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.2e-20 104.8 102 54.9
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.9e-18 97.4 108 50.0
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 2.7e-17 93.6 79 65.8
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.8e-16 90.9 81 60.5
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.8e-16 90.9 81 60.5
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 3.0e-16 90.1 58 75.9
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 8.8e-16 88.6 58 74.1
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 9.7e-15 85.1 60 68.3
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.7e-14 84.3 96 49.0
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.3e-13 79.3 57 64.9
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.3e-11 74.7 191 30.4
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 3.6e-09 66.6 122 30.3
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 4.0e-08 63.2 51 54.9
AagrBONN_evm.TU.Sc2ySwM_117.310 Anthoceros agrestis HOM05D020303 ORTHO05D021299 8.2e-06 55.5 46 54.3


User provided reference genes

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