Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.6e-269 932.2 463 100.0
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 7.8e-269 929.9 463 99.8
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.1e-265 919.5 463 98.3
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 4.8e-250 867.5 463 92.7
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 2.9e-247 858.2 460 92.6
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 4.2e-246 854.4 472 90.3
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 4.8e-242 840.9 459 90.8
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 4.1e-193 678.3 463 74.5
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.6e-192 675.6 460 75.4
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 2.7e-189 665.6 463 74.3
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.4e-188 663.3 470 72.3
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.2e-187 660.2 461 73.5
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 2.6e-187 659.1 467 72.2
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.4e-187 658.7 467 71.9
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 4.4e-187 658.3 460 73.5
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 2.8e-186 655.6 470 70.6
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.1e-185 653.7 456 72.8
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 3.1e-185 652.1 467 71.3
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 5.4e-185 651.4 467 71.3
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 5.4e-185 651.4 462 71.4
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.2e-184 650.2 464 72.6
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 1.2e-184 650.2 471 70.5
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.6e-184 649.8 468 72.4
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 1.1e-182 643.7 469 70.6
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 1.9e-182 642.9 471 72.2
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.2e-181 640.2 467 70.2
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 8.0e-181 637.5 466 72.1
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.8e-180 636.3 473 69.3
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 6.8e-180 634.4 465 70.1
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 5.7e-179 631.3 455 69.5
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 2.8e-178 629.0 466 67.8
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.8e-177 626.3 465 69.2
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 2.4e-177 625.9 454 69.6
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 4.1e-177 625.2 451 69.6
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 1.2e-176 623.6 460 69.6
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 2.0e-176 622.9 432 72.5
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.7e-176 622.5 454 70.0
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 5.0e-175 618.2 465 68.2
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.1e-174 617.1 469 67.0
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 3.3e-174 615.5 463 69.1
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 4.3e-174 615.1 456 71.1
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 3.6e-173 612.1 477 69.0
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.4e-172 610.1 465 66.7
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 2.3e-172 609.4 454 66.5
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.8e-172 607.8 465 66.5
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 6.8e-172 607.8 463 67.8
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.2e-171 607.1 470 65.7
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.3e-170 603.6 473 67.0
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 1.7e-170 603.2 459 67.1
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 2.9e-170 602.4 454 67.0
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 3.7e-170 602.1 461 65.5
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 3.7e-170 602.1 475 66.3
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 6.4e-170 601.3 433 70.4
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 3.2e-169 599.0 467 66.6
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 3.2e-169 599.0 459 65.4
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 7.0e-169 597.8 467 67.5
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.2e-168 597.0 455 64.8
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.6e-168 596.7 462 65.4
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 3.5e-168 595.5 511 62.4
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 5.9e-168 594.7 470 66.6
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.0e-167 594.0 462 64.9
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.3e-167 593.6 468 66.9
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.3e-167 593.6 450 67.1
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.3e-167 592.8 458 67.2
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 2.3e-167 592.8 467 66.8
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 2.3e-167 592.8 471 66.5
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.0e-167 592.4 458 67.2
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 8.6e-167 590.9 458 66.8
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.1e-166 590.5 458 67.0
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.5e-166 590.1 462 66.7
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 1.5e-166 590.1 463 66.7
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 3.3e-166 589.0 460 68.5
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.3e-166 588.6 459 67.1
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.3e-166 588.6 459 67.1
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 9.5e-166 587.4 460 66.7
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 3.6e-165 585.5 468 65.4
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 4.7e-165 585.1 444 67.8
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 6.2e-165 584.7 468 65.4
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 6.8e-164 581.3 468 65.2
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 6.8e-164 581.3 468 65.2
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.6e-163 579.3 465 65.8
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 4.4e-163 578.6 472 65.0
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 4.9e-162 575.1 467 63.6
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 4.1e-161 572.0 456 64.0
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 5.4e-161 571.6 473 63.6
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 1.6e-160 570.1 467 64.7
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 1.3e-159 567.0 460 65.7
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 1.3e-159 567.0 449 64.8
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 3.6e-157 558.9 472 63.8
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 6.2e-157 558.1 463 63.9
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 5.8e-155 551.6 415 68.0
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 9.8e-155 550.8 472 63.3
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 2.7e-152 542.7 367 73.8
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 3.3e-150 535.8 434 63.6
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 1.3e-146 523.9 450 60.0
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 2.2e-146 523.1 463 62.2
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 4.1e-145 518.8 462 58.0
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 7.1e-145 518.1 458 59.8
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 2.7e-144 516.2 588 50.2
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 1.1e-142 510.8 451 61.9
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.2e-139 500.7 464 55.6
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 2.9e-138 496.1 443 58.2
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.4e-137 493.8 287 84.3
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 4.6e-136 488.8 311 78.5
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.3e-135 487.3 463 58.1
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.0e-135 486.1 411 62.3
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 7.3e-134 481.5 294 80.6
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 5.1e-111 405.6 425 54.4
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.2e-107 394.4 221 86.4
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.6e-104 384.0 361 55.4
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 7.4e-102 375.2 471 50.1
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 5.3e-100 369.0 473 47.8
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 1.1e-92 344.7 259 68.7
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 5.0e-90 335.9 273 58.6
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 8.0e-72 275.4 171 79.5
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 6.3e-69 265.8 485 35.9
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 6.3e-69 265.8 283 51.2
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 3.5e-67 260.0 456 36.8
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 4.7e-56 223.0 471 31.6
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.4e-44 184.9 244 45.1
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 4.1e-36 156.8 135 55.6
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.1e-33 148.7 238 41.6
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.3e-33 146.7 95 76.8
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 1.2e-32 145.2 202 35.6
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 5.1e-26 123.2 170 41.2
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 8.6e-26 122.5 80 71.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.1e-23 115.5 62 83.9
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.7e-18 98.2 82 57.3
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.1e-15 87.4 61 72.1
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 1.5e-06 58.5 49 63.3


User provided reference genes

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