Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 1.4e-142 509.6 260 100.0
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 9.2e-126 453.8 249 94.0
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 1.8e-105 386.3 249 83.5
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 4.6e-101 371.7 308 66.9
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 1.9e-99 366.3 298 68.5
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 4.3e-99 365.2 301 68.8
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 2.4e-41 173.3 302 43.7
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 1.9e-38 163.7 303 42.6
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 7.2e-38 161.8 303 42.6
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 1.3e-34 151.0 153 52.9
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 6.3e-34 148.7 210 48.6
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 7.0e-33 145.2 258 44.2
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 5.9e-32 142.1 218 47.7
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 3.8e-31 139.4 145 53.8
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 2.5e-30 136.7 218 46.3
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 3.3e-30 136.3 235 46.4
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 9.5e-30 134.8 297 38.0
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 2.1e-29 133.7 262 40.5
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 2.1e-29 133.7 258 42.2
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 1.8e-28 130.6 299 39.5
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 5.2e-28 129.0 305 40.7
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 3.4e-27 126.3 265 39.2
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 9.8e-27 124.8 302 37.1
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 9.8e-27 124.8 302 37.1
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 9.8e-27 124.8 302 37.1
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 2.2e-26 123.6 256 41.0
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 2.8e-26 123.2 263 39.2
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 1.1e-25 121.3 169 49.7
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 3.1e-25 119.8 270 36.3
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 7.0e-25 118.6 303 36.3
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.6e-24 117.5 254 38.6
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 5.9e-24 115.5 257 40.9
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 1.7e-23 114.0 207 41.1
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 1.7e-23 114.0 262 39.7
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 4.3e-22 109.4 269 37.2
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 2.1e-21 107.1 293 34.8
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 4.7e-21 105.9 210 41.9
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.8e-20 104.0 269 36.4
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 2.3e-20 103.6 186 44.6
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 3.0e-20 103.2 269 36.8
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 5.2e-20 102.4 170 46.5
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 2.0e-19 100.5 209 41.6
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 5.8e-19 99.0 250 41.2
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 1.3e-18 97.8 151 45.0
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 3.7e-18 96.3 210 40.0
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 1.4e-17 94.4 228 40.8
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 1.8e-17 94.0 201 37.3
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 3.2e-17 93.2 184 39.1
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 9.2e-17 91.7 265 34.7
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 1.0e-15 88.2 192 41.1
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 1.0e-15 88.2 269 32.7
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 1.3e-15 87.8 188 38.8
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 1.7e-15 87.4 202 38.1
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 1.7e-15 87.4 276 34.8
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 3.0e-15 86.7 201 38.3
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 3.0e-15 86.7 177 38.4
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 3.9e-15 86.3 295 31.5
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 3.9e-15 86.3 297 31.6
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 8.6e-15 85.1 127 47.2
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 1.5e-14 84.3 192 38.0
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 1.9e-14 84.0 141 39.0
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 9.5e-14 81.6 206 36.9
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 2.1e-13 80.5 198 37.9
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 3.6e-13 79.7 249 33.7
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 4.7e-13 79.3 216 37.5
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 6.2e-13 79.0 246 32.9
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 6.8e-12 75.5 271 31.7
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 1.5e-11 74.3 184 37.0
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 4.4e-11 72.8 171 38.6
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 7.5e-11 72.0 212 34.0
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 6.4e-10 68.9 97 45.4
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 1.9e-09 67.4 165 36.4
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 2.4e-09 67.0 272 32.0
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 3.2e-09 66.6 101 47.5
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 1.6e-08 64.3 213 34.7
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 4.6e-08 62.8 111 41.4
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 4.6e-08 62.8 111 41.4
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 4.6e-08 62.8 111 41.4
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 1.0e-07 61.6 176 35.8
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 1.3e-07 61.2 174 36.8
SGA_v2.0_scaffold486G52377 Striga asiatica HOM05D007548 ORTHO05D009527 1.7e-07 60.8 265 30.6
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 3.0e-07 60.1 105 42.9
ECA233G0652 Erigeron canadensis HOM05D007548 ORTHO05D009527 3.9e-07 59.7 299 28.8
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 5.0e-07 59.3 137 37.2
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 4.3e-06 56.2 111 40.5
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 5.6e-06 55.8 111 40.5
BcaC03g14581 Brassica carinata HOM05D007548 ORTHO05D009527 7.3e-06 55.5 123 36.6
BolC2t08158H Brassica oleracea HOM05D007548 ORTHO05D009527 7.3e-06 55.5 123 36.6


User provided reference genes

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