Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.7e-135 486.1 264 100.0
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 3.3e-131 471.9 264 98.1
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.2e-111 406.0 264 86.7
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.3e-97 358.2 261 78.9
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.2e-93 347.1 267 75.3
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 2.7e-93 345.9 267 74.9
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.1e-89 334.0 272 72.1
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.4e-89 333.6 267 74.2
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.0e-88 329.7 251 76.1
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 3.5e-88 328.9 267 73.0
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 8.8e-84 314.3 256 69.1
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 4.4e-83 312.0 256 69.5
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 2.2e-82 309.7 256 69.1
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 1.1e-81 307.4 257 68.1
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 3.1e-81 305.8 172 96.5
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.7e-79 300.1 263 67.3
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-78 297.4 255 67.1
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.1e-78 297.4 268 64.9
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.9e-78 296.6 255 67.1
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.3e-78 295.4 251 68.9
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.6e-78 295.0 255 66.7
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.6e-77 293.5 256 65.6
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 2.1e-77 293.1 249 68.7
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.8e-77 292.7 256 65.2
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 8.0e-77 291.2 256 65.2
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.0e-76 290.8 262 64.5
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 1.4e-76 290.4 266 64.7
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.4e-75 285.8 260 64.6
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 9.8e-75 284.3 253 66.0
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 9.8e-75 284.3 256 65.2
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 2.2e-74 283.1 263 63.5
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.9e-74 282.0 256 63.7
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 4.1e-73 278.9 256 63.7
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.4e-73 278.5 258 63.2
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.2e-72 277.3 256 63.3
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.2e-72 277.3 268 62.7
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 7.8e-72 274.6 258 62.8
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.0e-71 274.2 257 64.6
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 2.3e-71 273.1 264 61.7
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.3e-71 273.1 256 62.5
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 3.0e-71 272.7 253 63.6
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.1e-70 270.8 249 65.1
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.9e-70 270.0 255 62.7
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 7.3e-70 268.1 255 62.0
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.2e-69 267.3 262 62.6
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.2e-69 267.3 250 61.6
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 2.8e-69 266.2 255 62.0
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 4.7e-69 265.4 257 60.3
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 6.2e-69 265.0 252 61.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 8.0e-69 264.6 258 59.7
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.4e-68 263.8 266 63.2
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.8e-68 263.5 258 60.5
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.8e-68 263.5 258 59.3
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.8e-68 263.5 287 57.5
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 2.3e-68 263.1 255 61.6
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 3.1e-68 262.7 255 62.4
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.2e-67 260.8 291 55.0
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.2e-67 260.8 251 60.6
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.5e-67 260.4 256 60.5
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 4.4e-67 258.8 253 63.2
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.8e-67 258.5 258 58.9
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 5.8e-67 258.5 255 60.8
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 7.5e-67 258.1 254 61.4
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 7.5e-67 258.1 319 54.5
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 9.8e-67 257.7 252 60.7
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 9.8e-67 257.7 247 62.3
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.7e-66 256.9 252 61.1
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.2e-66 256.5 257 60.7
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 3.7e-66 255.8 252 59.1
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 6.4e-66 255.0 252 61.1
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 8.3e-66 254.6 230 65.7
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.9e-65 253.4 253 60.5
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.9e-65 253.4 246 62.2
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 1.9e-65 253.4 228 66.2
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 7.0e-65 251.5 252 59.5
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.2e-64 250.8 253 57.3
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.6e-64 250.4 250 60.0
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 2.0e-64 250.0 252 59.1
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 2.7e-64 249.6 250 58.4
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 2.7e-64 249.6 252 59.5
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 7.8e-64 248.1 208 69.2
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.0e-63 247.7 257 60.3
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 2.3e-63 246.5 258 59.7
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 3.0e-63 246.1 253 59.3
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 3.9e-63 245.7 250 59.2
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 5.0e-63 245.4 254 58.7
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 2.5e-62 243.0 258 60.1
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 2.5e-62 243.0 252 57.5
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 9.5e-62 241.1 254 57.9
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.2e-61 240.7 254 56.3
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.1e-61 240.0 262 57.6
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.8e-61 239.6 254 55.9
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 3.6e-61 239.2 254 58.3
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 8.1e-61 238.0 251 58.6
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 5.2e-60 235.3 247 57.9
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 6.8e-60 235.0 256 58.2
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 9.8e-59 231.1 248 58.1
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.3e-58 230.7 160 78.1
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 2.9e-58 229.6 264 56.1
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 2.9e-58 229.6 166 75.9
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 8.3e-58 228.0 252 56.3
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.4e-57 227.3 248 55.6
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.9e-57 226.9 263 56.7
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.9e-57 226.9 253 55.7
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.4e-57 226.5 258 57.8
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.7e-56 223.0 252 56.0
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 7.8e-56 221.5 224 59.4
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.3e-55 220.7 255 55.3
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.7e-55 220.3 310 47.1
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 3.0e-55 219.5 256 55.5
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 3.0e-55 219.5 153 77.8
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 3.9e-55 219.2 256 55.5
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 4.3e-54 215.7 379 42.5
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.8e-53 213.0 191 67.0
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.6e-51 206.5 253 56.5
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 3.5e-48 196.1 270 50.0
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.1e-46 191.0 255 50.6
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.6e-45 187.2 276 42.4
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.4e-44 184.1 247 47.4
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 9.3e-41 171.4 220 50.5
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.7e-39 167.2 235 47.7
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 9.6e-38 161.4 255 45.1
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.6e-37 160.6 196 54.6
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.3e-34 151.0 173 54.9
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.3e-34 151.0 182 53.3
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 6.4e-34 148.7 100 79.0
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 6.0e-32 142.1 98 73.5
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.0e-31 141.4 269 44.2
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 2.5e-30 136.7 153 56.2
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 5.6e-30 135.6 137 56.9
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 1.1e-20 104.8 123 47.2
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 1.2e-19 101.3 106 57.5
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.4e-17 94.4 65 76.9
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.6e-16 90.9 226 39.8
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.5e-14 84.3 68 63.2
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 1.5e-14 84.3 150 42.0
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.3e-13 81.3 54 81.5
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-12 78.2 132 41.7
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 9.0e-12 75.1 102 46.1
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 3.4e-11 73.2 63 63.5
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.3e-10 71.2 163 36.8
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.7e-10 70.9 169 33.1
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 1.4e-09 67.8 91 46.2
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.3e-07 60.5 39 69.2


User provided reference genes

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