Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 8.6e-243 843.2 413 100.0
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 4.1e-237 824.3 413 97.8
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 8.6e-219 763.5 416 91.1
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 1.3e-201 706.4 413 84.0
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.2e-140 503.8 422 60.9
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.6e-138 496.1 421 60.8
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 7.5e-138 494.6 361 67.0
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 4.8e-137 491.9 360 67.5
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 3.1e-136 489.2 411 61.6
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 7.0e-136 488.0 419 63.2
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 2.9e-134 482.6 360 65.8
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 6.5e-134 481.5 377 65.5
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.1e-132 474.9 315 78.1
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 1.2e-130 470.7 335 69.0
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.2e-130 470.7 417 60.4
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 1.2e-130 470.7 361 64.0
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.6e-130 469.5 322 70.8
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 7.5e-130 468.0 372 63.4
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.4e-128 463.8 322 68.6
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 5.4e-128 461.8 375 63.5
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 5.9e-127 458.4 387 60.7
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.1e-125 454.1 407 58.5
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.1e-125 454.1 405 58.8
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.1e-125 454.1 406 59.4
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 3.6e-124 449.1 323 67.2
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 4.7e-124 448.7 324 68.8
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 6.1e-124 448.4 336 66.1
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.0e-123 447.6 342 64.3
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.4e-123 447.2 327 67.3
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.4e-123 447.2 344 64.5
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 2.3e-123 446.4 339 66.4
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 2.3e-123 446.4 338 66.0
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 6.8e-123 444.9 364 59.9
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.9e-123 444.5 340 65.0
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 8.9e-123 444.5 369 61.0
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 8.9e-123 444.5 338 65.1
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 8.9e-123 444.5 341 65.4
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.6e-122 443.0 334 65.6
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 2.6e-122 443.0 331 66.5
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.4e-122 442.6 340 63.5
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 5.7e-122 441.8 263 77.9
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 1.3e-121 440.7 325 65.8
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 1.7e-121 440.3 252 81.0
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 2.2e-121 439.9 340 62.9
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 4.9e-121 438.7 337 64.7
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 6.4e-121 438.3 334 65.3
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 8.3e-121 438.0 424 56.6
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 1.1e-120 437.6 344 64.2
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.8e-120 436.8 297 72.4
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.2e-120 436.0 341 63.6
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 7.0e-120 434.9 323 66.6
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 7.0e-120 434.9 338 64.2
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 7.0e-120 434.9 338 64.2
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.2e-119 434.1 340 63.5
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.6e-119 433.7 258 78.3
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 2.0e-119 433.3 338 64.5
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.7e-119 433.0 338 64.5
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.7e-119 433.0 338 64.5
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 2.7e-119 433.0 352 63.4
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.9e-119 431.8 336 63.1
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.3e-118 430.6 339 64.9
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.7e-118 430.3 392 58.9
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.1e-117 427.6 254 78.0
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.1e-117 427.6 322 65.5
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.1e-117 427.6 321 66.7
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.9e-117 426.8 323 65.0
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.9e-117 426.8 342 64.3
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 9.5e-117 424.5 349 62.5
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 8.0e-116 421.4 245 80.0
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.4e-115 420.6 324 65.7
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 3.1e-115 419.5 350 60.9
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 6.8e-115 418.3 336 62.2
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.5e-114 417.2 394 57.1
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 7.5e-114 414.8 332 64.5
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 7.5e-114 414.8 338 61.5
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 9.8e-114 414.5 252 76.6
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.7e-113 413.7 249 75.1
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 2.2e-113 413.3 338 62.7
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 3.7e-113 412.5 337 61.7
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 8.3e-113 411.4 259 74.9
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.4e-112 409.8 336 61.3
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 6.6e-110 401.7 366 57.9
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 2.5e-109 399.8 330 60.0
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.3e-107 393.3 335 60.9
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 6.8e-107 391.7 349 58.7
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.0e-102 377.9 385 52.7
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 2.5e-101 373.2 233 72.5
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 2.3e-99 366.7 310 61.0
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 3.1e-99 366.3 329 56.5
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 5.8e-98 362.1 233 71.2
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 9.9e-98 361.3 284 61.3
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.1e-95 353.6 231 71.0
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 3.5e-95 352.8 354 54.2
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 7.3e-93 345.1 322 58.1
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 8.1e-92 341.7 191 79.6
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 4.9e-89 332.4 185 81.1
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 3.5e-87 326.2 341 50.4
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 4.8e-84 315.8 191 78.0
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.8e-84 315.8 282 56.0
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.8e-84 315.8 270 56.7
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.2e-74 284.6 273 50.9
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 7.6e-74 282.0 293 46.4
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.2e-73 280.4 272 61.4
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 6.4e-73 278.9 220 69.5
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.8e-70 270.8 411 45.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.6e-68 264.2 196 60.7
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 2.9e-65 253.4 226 53.1
Solyc03g006454.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.6e-58 230.3 119 97.5
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.3e-57 228.0 119 79.8
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 4.2e-56 223.0 123 82.1
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.3e-54 217.2 292 42.8
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 4.3e-53 213.0 110 88.2
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.1e-48 198.4 244 48.0
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 2.5e-48 197.2 202 53.0
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 3.9e-46 189.9 114 79.8
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.3e-44 184.9 200 52.0
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.7e-44 184.5 172 58.1
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 7.7e-42 175.6 181 55.2
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 2.3e-38 164.1 264 37.9
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.8e-36 157.1 99 71.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.6e-34 151.4 343 29.7
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.2e-26 125.2 351 27.9
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.3e-25 121.7 61 83.6
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 2.7e-23 114.0 98 60.2
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 6.8e-22 109.4 55 81.8
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 2.4e-19 100.9 73 67.1
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 3.1e-19 100.5 185 39.5
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 3.5e-18 97.1 62 74.2
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 2.2e-17 94.4 61 78.7
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 2.2e-17 94.4 79 64.6
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 4.2e-16 90.1 80 61.2
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 4.4e-13 80.1 51 72.5
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 7.5e-13 79.3 55 76.4
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.8e-11 74.7 180 30.6
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.5e-10 70.5 47 66.0
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 1.1e-08 65.5 49 65.3


User provided reference genes

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