Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.9e-176 621.7 296 100.0
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.5e-132 476.5 315 78.1
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 2.4e-130 469.2 315 76.8
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 5.4e-122 441.4 318 72.3
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 5.9e-121 438.0 314 71.7
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 3.2e-106 389.0 317 62.8
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 2.1e-105 386.3 315 63.5
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 2.7e-105 386.0 318 63.2
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 3.5e-105 385.6 316 63.6
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 3.5e-105 385.6 316 62.7
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 4.6e-105 385.2 303 63.4
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 6.0e-105 384.8 316 63.0
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 7.8e-105 384.4 317 62.8
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 3.0e-104 382.5 316 62.3
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 5.1e-104 381.7 316 61.4
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 5.1e-104 381.7 299 65.6
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.5e-103 380.2 316 61.1
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 8.1e-102 374.4 306 63.7
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.3e-101 372.9 316 60.4
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.3e-101 372.9 315 60.3
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 8.9e-101 370.9 317 60.9
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.5e-100 370.2 316 60.4
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.9e-99 365.9 316 60.1
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.9e-99 365.9 299 61.5
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 4.9e-99 365.2 299 63.2
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 1.9e-98 363.2 316 58.2
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 3.2e-98 362.5 304 61.2
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.1e-98 362.1 297 61.6
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 9.2e-98 360.9 297 62.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.6e-97 360.1 297 60.6
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.6e-97 360.1 308 60.1
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.1e-97 359.8 316 60.1
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.7e-97 359.4 302 60.6
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 2.7e-97 359.4 226 76.5
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 3.5e-97 359.0 303 62.0
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 4.6e-97 358.6 297 61.6
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 6.0e-97 358.2 302 60.9
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 6.0e-97 358.2 299 61.2
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 7.8e-97 357.8 225 75.1
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.0e-96 357.5 305 60.0
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.0e-96 357.5 225 74.2
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.0e-96 357.5 298 62.1
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 3.0e-96 355.9 303 61.4
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 5.1e-96 355.1 297 60.6
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 8.6e-96 354.4 317 58.4
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.1e-95 354.0 299 61.2
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.1e-95 354.0 299 61.2
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.1e-95 354.0 300 60.7
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.1e-95 354.0 300 60.7
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.1e-95 354.0 303 60.4
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.9e-95 353.2 339 56.0
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.5e-95 352.8 300 60.7
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 2.5e-95 352.8 300 60.7
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.5e-95 352.8 300 60.7
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 3.3e-95 352.4 290 63.1
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 3.3e-95 352.4 306 57.8
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 3.3e-95 352.4 298 60.7
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 5.6e-95 351.7 315 56.8
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 7.3e-95 351.3 315 56.8
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 7.3e-95 351.3 305 59.3
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 7.3e-95 351.3 225 74.7
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 7.3e-95 351.3 225 73.8
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.2e-94 350.5 296 59.8
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.6e-94 350.1 316 57.6
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.1e-94 349.7 316 59.2
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 4.7e-94 348.6 318 57.2
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.1e-94 347.8 293 60.4
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 4.0e-93 345.5 299 60.9
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 5.2e-93 345.1 302 59.3
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 6.9e-93 344.7 275 61.1
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 2.0e-92 343.2 225 72.0
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.4e-92 342.4 228 71.5
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 9.9e-92 340.9 233 70.0
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.3e-91 340.5 226 72.1
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.2e-91 339.7 217 72.4
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.2e-91 339.7 318 55.7
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 8.4e-91 337.8 306 59.2
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 2.4e-90 336.3 297 58.9
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 2.4e-90 336.3 225 70.7
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 5.4e-90 335.1 304 58.9
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.6e-89 333.6 294 57.5
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 3.0e-88 329.3 227 70.0
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 1.6e-86 323.6 293 59.4
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 2.0e-84 316.6 327 53.8
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 7.6e-84 314.7 225 65.8
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 9.9e-84 314.3 330 52.1
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.7e-83 313.5 317 53.3
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 8.4e-83 311.2 250 60.8
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.2e-82 308.9 267 58.4
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 7.1e-82 308.1 297 55.2
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.6e-81 307.0 301 54.8
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.1e-79 300.8 215 66.5
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.1e-77 294.3 191 72.8
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 2.8e-70 269.6 246 55.7
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 3.7e-70 269.2 191 70.7
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.4e-69 267.3 316 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 1.2e-68 264.2 328 46.0
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.5e-68 263.8 230 58.7
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 2.1e-65 253.4 244 52.5
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.9e-63 246.9 327 43.7
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 8.2e-62 241.5 257 47.9
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 5.0e-59 232.3 269 43.9
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 5.0e-59 232.3 217 51.2
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 2.1e-57 226.9 196 55.1
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 2.3e-56 223.4 126 80.2
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 3.1e-53 213.0 110 88.2
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.7e-47 192.2 153 65.4
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 2.8e-46 189.9 114 79.8
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.4e-45 187.6 289 44.6
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 2.5e-42 176.8 119 66.4
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.7e-31 139.0 164 51.8
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 1.7e-30 137.5 147 50.3
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 3.7e-30 136.3 144 52.8
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 6.3e-30 135.6 247 35.6
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 3.1e-29 133.3 194 40.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 2.2e-27 127.1 318 28.9
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 5.2e-24 115.9 164 43.3
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.2e-23 114.8 99 57.6
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 2.0e-23 114.0 98 60.2
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.6e-23 113.6 142 53.5
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 6.3e-22 109.0 55 81.8
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.7e-19 100.9 297 25.6
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.7e-19 100.9 73 67.1
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 2.5e-18 97.1 62 74.2
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.6e-17 94.4 61 78.7
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.4e-16 91.3 154 42.9
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.0e-16 90.1 80 61.2
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.0e-15 87.4 120 46.7
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 3.7e-14 83.2 90 46.7
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.3e-11 74.7 61 60.7
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.5e-10 70.5 47 66.0
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.6e-09 67.8 124 38.7
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 5.2e-08 62.8 48 60.4


User provided reference genes

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