Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 0.0e+00 1124.0 564 100.0
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.0e-307 1059.3 564 93.6
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 5.6e-277 957.2 569 85.9
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.6e-268 929.1 570 82.8
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.3e-261 904.8 569 81.0
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.8e-249 864.8 576 76.9
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.2e-243 844.3 568 76.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.1e-237 826.6 564 77.1
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.8e-228 795.4 567 70.5
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.4e-227 793.1 557 72.0
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 3.9e-222 775.0 557 69.7
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 6.7e-222 774.2 561 69.7
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.4e-219 765.8 558 69.9
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 4.0e-219 765.0 563 71.0
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 6.9e-219 764.2 560 69.1
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.4e-218 761.9 557 69.7
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 3.4e-218 761.9 564 69.9
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 6.5e-217 757.7 557 69.5
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.4e-216 756.5 557 68.2
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 4.2e-216 755.0 569 65.9
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 3.5e-215 751.9 556 69.6
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 4.6e-215 751.5 564 69.5
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 2.3e-214 749.2 562 68.5
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 8.7e-214 747.3 561 68.4
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 9.7e-213 743.8 569 66.4
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.8e-212 742.3 564 67.7
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 2.8e-212 742.3 558 67.9
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.1e-211 738.8 569 67.5
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 4.1e-211 738.4 571 67.3
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 9.0e-211 737.3 568 66.0
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.6e-210 735.7 566 67.7
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.7e-209 733.0 559 68.3
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.8e-209 731.9 559 68.9
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 4.2e-208 728.4 567 66.8
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.5e-208 728.0 560 66.8
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.6e-207 726.5 565 64.6
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-205 720.3 497 73.0
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.3e-205 718.4 569 64.3
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 2.2e-204 716.1 574 63.9
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.3e-204 714.5 568 65.1
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-203 712.6 568 65.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.1e-203 712.2 569 67.0
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.0e-202 709.5 557 67.5
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 5.9e-202 708.0 562 66.0
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.9e-202 708.0 567 65.3
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.9e-202 708.0 567 65.3
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-200 703.4 557 66.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 9.4e-200 700.7 561 65.8
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 2.1e-199 699.5 557 65.4
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.1e-199 699.5 568 64.6
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.6e-199 698.7 557 64.3
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 3.6e-199 698.7 568 63.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 6.1e-199 698.0 562 64.2
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.0e-197 693.0 569 62.7
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 4.4e-197 691.8 573 63.9
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 5.7e-197 691.4 568 63.9
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 7.4e-197 691.0 556 64.2
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 4.8e-196 688.3 568 63.6
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 6.3e-196 688.0 568 63.2
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 6.3e-196 688.0 568 63.2
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 8.2e-196 687.6 568 63.2
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.4e-195 686.8 558 63.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.8e-195 686.4 503 70.6
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.8e-195 686.4 563 63.9
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.8e-195 686.4 580 60.5
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.4e-195 686.0 570 63.9
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 6.9e-195 684.5 568 62.7
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 7.7e-194 681.0 572 64.2
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.0e-193 680.6 562 63.9
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.3e-193 680.2 564 62.2
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.2e-193 679.5 572 62.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.9e-193 679.1 575 62.8
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.8e-193 678.7 567 62.6
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 2.5e-192 676.0 556 61.2
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.4e-189 665.2 563 61.8
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 5.7e-189 664.8 564 62.4
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 7.4e-189 664.5 565 62.1
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.7e-188 663.3 573 62.1
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 4.8e-188 661.8 559 62.6
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 8.2e-188 661.0 573 62.0
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.8e-187 659.8 561 62.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.8e-187 659.8 567 61.9
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-187 659.4 561 62.2
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 9.1e-187 657.5 570 61.4
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.2e-186 657.1 566 60.8
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 5.9e-186 654.8 561 61.9
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.0e-185 654.1 568 61.3
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.0e-185 654.1 564 60.5
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 3.8e-185 652.1 561 60.8
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 2.5e-184 649.4 561 61.5
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.2e-184 649.0 568 61.1
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.5e-184 648.3 447 70.2
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 7.2e-184 647.9 557 60.9
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.1e-183 646.4 567 60.3
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 2.7e-183 646.0 567 58.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.7e-183 646.0 567 61.4
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 2.7e-183 646.0 566 60.6
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 4.7e-183 645.2 564 60.1
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-182 644.0 573 60.0
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-181 640.2 583 59.5
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 2.0e-181 639.8 563 60.7
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 3.3e-181 639.0 444 72.7
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 8.2e-180 634.4 558 58.8
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 7.0e-179 631.3 413 74.1
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.2e-175 620.5 573 58.6
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 8.0e-175 617.8 556 58.3
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.8e-174 616.7 559 60.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.3e-174 616.3 566 60.1
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 3.5e-170 602.4 567 58.2
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.0e-169 600.9 576 54.3
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 3.8e-169 599.0 567 57.5
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 2.6e-165 586.3 467 62.5
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.3e-164 583.9 530 59.8
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.7e-164 583.6 567 56.8
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.2e-162 577.4 588 52.4
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.5e-160 569.7 572 57.5
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-158 564.3 402 69.2
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 6.4e-156 555.1 339 78.8
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 3.2e-155 552.7 562 55.2
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 4.1e-155 552.4 385 70.4
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 3.9e-153 545.8 563 52.8
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.9e-148 529.6 552 52.7
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 6.4e-148 528.5 516 56.0
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.8e-138 495.0 302 79.1
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 4.4e-125 452.6 469 55.4
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.5e-120 437.6 498 44.2
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.1e-110 404.8 369 61.2
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 3.8e-108 396.4 396 54.8
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 3.5e-98 363.2 512 45.1
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.3e-96 356.3 430 42.8
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 9.0e-94 348.6 197 82.2
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 3.2e-91 340.1 318 59.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.2e-83 313.5 210 69.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.9e-82 308.9 359 49.3
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-78 297.7 302 56.0
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.1e-70 268.9 155 81.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 8.8e-57 225.7 272 50.4
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 7.5e-56 222.6 200 59.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.2e-51 206.1 180 62.8
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 4.0e-49 200.3 220 55.5
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.7e-44 184.9 284 41.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 3.5e-37 160.6 96 79.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 6.6e-36 156.4 91 81.3
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 9.8e-32 142.5 472 26.7
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 3.1e-25 120.9 74 78.4
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-24 117.9 69 81.2
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-24 117.9 69 81.2
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.3e-23 115.5 79 67.1
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 4.1e-22 110.5 115 49.6
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.6e-21 108.6 152 47.4
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 6.6e-20 103.2 180 32.8
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.1e-17 95.9 121 47.1
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.9e-15 87.8 51 82.4
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 8.4e-15 86.3 73 56.2
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 8.7e-12 76.3 81 54.3
Nitab4.5_0003733g0050 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.1e-10 71.6 43 74.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 9.0e-09 66.2 70 50.0


User provided reference genes

Program Settings