Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.2e-218 761.9 369 100.0
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 3.8e-210 734.6 369 96.2
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.7e-200 701.0 375 90.7
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.2e-150 537.0 385 71.2
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.6e-147 525.0 391 68.8
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.4e-143 512.7 383 68.4
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 6.7e-122 441.4 361 63.4
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 9.1e-95 351.3 351 51.0
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.0e-90 337.8 450 44.2
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 4.7e-83 312.4 384 45.1
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.7e-80 303.9 373 45.0
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 4.1e-79 299.3 377 44.3
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 4.5e-78 295.8 390 44.6
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 2.8e-75 286.6 370 43.0
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.3e-74 283.5 385 42.3
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 5.2e-74 282.3 379 42.2
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 8.9e-74 281.6 299 48.8
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.5e-73 280.8 368 42.4
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 4.9e-72 275.8 381 40.4
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 6.4e-72 275.4 415 38.8
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 4.1e-71 272.7 390 41.5
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 9.2e-71 271.6 362 43.6
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.6e-70 270.8 363 39.4
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 2.0e-70 270.4 368 41.0
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 2.0e-70 270.4 371 40.4
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 4.6e-70 269.2 380 42.1
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.7e-69 267.3 367 39.5
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 5.6e-68 262.3 380 40.0
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 6.2e-67 258.8 359 40.9
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 6.2e-67 258.8 446 36.1
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 8.0e-67 258.5 363 38.0
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.8e-66 257.3 382 39.8
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.1e-66 256.5 368 38.6
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 5.2e-66 255.8 365 39.2
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 6.8e-66 255.4 379 39.6
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 8.9e-66 255.0 368 40.2
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.2e-65 254.6 379 39.6
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 2.0e-65 253.8 369 40.9
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.6e-65 253.4 363 39.1
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 3.4e-65 253.1 368 39.9
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.4e-65 253.1 363 37.5
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 4.4e-65 252.7 365 38.4
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 1.3e-64 251.1 422 36.0
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.3e-64 251.1 356 41.0
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.3e-64 251.1 377 37.9
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 2.9e-64 250.0 382 39.8
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 6.4e-64 248.8 382 37.7
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 1.4e-63 247.7 372 39.0
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.4e-63 246.9 378 40.2
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 4.1e-63 246.1 379 39.8
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.2e-62 244.6 377 38.2
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 2.1e-62 243.8 388 36.6
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 6.0e-62 242.3 362 39.2
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 6.0e-62 242.3 364 37.9
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.7e-61 240.7 386 37.6
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 5.1e-61 239.2 389 38.0
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 5.1e-61 239.2 392 38.3
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 4.3e-60 236.1 373 37.3
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 5.6e-60 235.7 367 37.6
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 7.3e-60 235.3 367 39.0
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.2e-59 234.6 207 53.6
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 3.6e-59 233.0 298 46.3
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.4e-58 231.1 179 58.7
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.1e-58 229.9 195 54.9
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 6.8e-58 228.8 365 37.8
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 8.9e-58 228.4 182 57.7
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 3.7e-56 223.0 393 34.1
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 4.9e-56 222.6 407 33.4
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 3.2e-55 219.9 360 36.9
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 4.1e-55 219.5 369 36.0
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.6e-54 217.6 172 56.4
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.0e-53 214.9 352 36.1
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 3.9e-53 213.0 359 35.7
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 5.1e-53 212.6 316 39.9
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.5e-52 211.1 193 52.3
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 4.3e-52 209.5 441 33.1
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 4.7e-51 206.1 347 35.7
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.4e-50 204.5 174 51.1
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-50 204.5 374 34.5
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-50 204.1 444 31.8
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 8.9e-50 201.8 415 32.8
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 3.8e-48 196.4 331 35.3
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 4.9e-48 196.1 454 30.6
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.4e-47 194.5 468 30.1
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 2.4e-47 193.7 317 35.6
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 9.3e-47 191.8 244 41.0
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.7e-46 190.3 223 44.4
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 7.8e-46 188.7 361 31.9
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.0e-45 188.3 357 33.3
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 4.3e-44 183.0 362 35.6
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 1.6e-43 181.0 360 31.7
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 6.2e-43 179.1 338 33.4
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 8.1e-43 178.7 187 47.1
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 8.1e-43 178.7 174 46.0
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 3.1e-42 176.8 185 45.4
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 4.0e-42 176.4 193 43.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 1.5e-41 174.5 359 31.5
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 2.0e-41 174.1 369 33.6
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.6e-41 173.7 368 32.9
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.4e-41 173.3 362 32.9
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.6e-41 172.2 190 45.8
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 9.9e-41 171.8 191 47.1
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 1.7e-40 171.0 205 42.0
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 6.4e-40 169.1 175 46.3
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.1e-39 168.3 401 31.9
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.4e-39 167.2 363 30.9
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 3.2e-39 166.8 218 43.1
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.4e-39 166.0 366 29.2
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 4.6e-38 162.9 339 31.0
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 6.0e-38 162.5 292 34.2
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.7e-37 161.0 350 32.9
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 3.9e-37 159.8 191 43.5
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 1.1e-36 158.3 188 43.6
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.9e-36 157.5 365 32.9
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 2.1e-35 154.1 178 43.8
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 2.1e-35 154.1 178 43.8
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 8.1e-35 152.1 363 28.9
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.4e-34 151.4 345 31.3
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.4e-34 151.4 345 31.3
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.4e-34 151.4 152 48.0
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 3.1e-34 150.2 193 43.0
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 5.3e-34 149.4 178 43.8
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 5.3e-34 149.4 151 47.7
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 6.9e-34 149.1 178 43.3
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 9.0e-34 148.7 175 42.3
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 9.0e-34 148.7 162 43.8
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 2.6e-33 147.1 186 44.1
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 5.8e-33 146.0 193 42.5
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.7e-32 144.4 191 42.4
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 2.2e-32 144.1 347 30.5
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 2.9e-32 143.7 176 43.8
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 6.0e-30 136.0 97 58.8
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.6e-27 127.9 178 39.9
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 4.8e-27 126.3 278 32.4
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.1e-26 125.2 201 34.3
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 4.0e-26 123.2 121 46.3
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 5.3e-26 122.9 189 35.4
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.0e-25 120.9 159 35.2
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 7.6e-25 119.0 143 42.7
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 1.0e-24 118.6 115 44.3
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 2.2e-24 117.5 163 39.3
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 2.2e-24 117.5 163 39.3
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.2e-24 117.5 105 46.7
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.9e-24 117.1 115 47.8
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 4.9e-24 116.3 180 35.6
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 8.4e-24 115.5 148 41.2
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.5e-23 114.0 290 28.3
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 2.5e-23 114.0 240 33.3
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 5.1e-21 106.3 141 37.6
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 6.7e-21 105.9 113 42.5
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 5.7e-20 102.8 158 33.5
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 2.1e-19 100.9 238 33.2
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 6.2e-19 99.4 244 32.8
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.1e-18 98.6 317 27.1
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 9.0e-18 95.5 74 52.7
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.0e-16 92.0 128 35.9
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.7e-16 91.3 172 30.8
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 9.7e-12 75.5 189 33.9
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 2.8e-11 73.9 57 52.6
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 1.8e-10 71.2 64 51.6
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.7e-08 64.7 70 35.7
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 2.2e-08 64.3 51 52.9
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.2e-08 64.3 110 35.5
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 5.0e-08 63.2 37 70.3
CAN.G1156.6 Capsicum annuum HOM05D001580 ORTHO05D001517 1.6e-06 58.2 170 28.2
Sopen11g001500 Solanum pennellii HOM05D001580 ORTHO05D001517 3.6e-06 57.0 165 29.7
Solyc11g005525.1 Solanum lycopersicum HOM05D001580 ORTHO05D001517 6.1e-06 56.2 173 27.2
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.9e-06 55.8 187 28.3
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 7.9e-06 55.8 41 53.7


User provided reference genes

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