Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g150124.1 Solanum lycopersicum HOM05D001017 ORTHO05D392960 4.7e-51 204.1 97 100.0
Sopen01g020660 Solanum pennellii HOM05D000006 ORTHO05D000001 2.6e-09 65.5 44 65.9
Pp3c2_34930 Physcomitrium patens HOM05D001017 ORTHO05D001025 3.8e-08 61.6 48 60.4
Atru.chr9.666 Acer truncatum HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
Aa31LG4G4340 Aethionema arabicum HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
AL2G33880 Arabidopsis lyrata HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
AT1G74030 Arabidopsis thaliana HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
Carub.0002s2082 Capsella rubella HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
CARHR067170 Cardamine hirsuta HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
ClCG06G015210 Citrullus lanatus HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
MELO3C017268.2 Cucumis melo HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
CsaV3_1G003090 Cucumis sativus L. HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
Thhalv10018478m.g Eutrema salsugineum HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
HanXRQChr05g0157781 Helianthus annuus HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
Lsat_1_v5_gn_2_118500 Lactuca sativa HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
Lsat_1_v5_gn_5_24101 Lactuca sativa HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
Lj9C434G14 Lonicera japonica HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
MD06G1208300 Malus domestica HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
MD14G1218700 Malus domestica HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
PSO063G0941 Papaver somniferum HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
PSO782G5352 Papaver somniferum HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
QL10p022056 Quercus lobata HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
SMO137G0162 Selaginella moellendorffii HOM05D001017 ORTHO05D001025 5.0e-08 61.2 48 58.3
Thecc.03G113500 Theobroma cacao HOM05D001017 ORTHO05D001025 5.0e-08 61.2 44 63.6
HPP92_021646 Vanilla planifolia HOM05D001017 ORTHO05D001025 5.0e-08 61.2 52 55.8
AagrBONN_evm.TU.Sc2ySwM_228.471 Anthoceros agrestis HOM05D001017 ORTHO05D001025 8.5e-08 60.5 48 60.4
BcaC08g46804 Brassica carinata HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
BcaC08g46833 Brassica carinata HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
A07p39910 Brassica napus HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
C06p48140 Brassica napus HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
BolC6t39851H Brassica oleracea HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
CAN.G982.12 Capsicum annuum HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Cfa019860 Carpinus fangiana HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Cc04_g07840 Coffea canephora HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Haze_18559 Corylus avellana HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
ECA246G0429 Erigeron canadensis HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Gohir.A03G073600 Gossypium hirsutum HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Gohir.D03G100000 Gossypium hirsutum HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Gorai.003G105100 Gossypium raimondii HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Manes.01G023200 Manihot esculenta HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Mapoly0005s0074 Marchantia polymorpha HOM05D001017 ORTHO05D001025 8.5e-08 60.5 48 60.4
Nitab4.5_0000646g0160 Nicotiana tabacum HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Nitab4.5_0004342g0060 Nicotiana tabacum HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Peaxi162Scf00017g03139 Petunia axillaris HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Sp5g29250 Schrenkiella parvula HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Solyc03g114500.4 Solanum lycopersicum HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
Sopen03g033590 Solanum pennellii HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
PGSC0003DMG401024510 Solanum tuberosum HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
THA.LOC104808296 Tarenaya hassleriana HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
vmacro17648 Vaccinium macrocarpon HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
GSVIVG01008197001 Vitis vinifera HOM05D001017 ORTHO05D001025 8.5e-08 60.5 44 63.6
BraA07t31537Z Brassica rapa HOM05D001017 ORTHO05D001025 1.1e-07 60.1 44 63.6
CSS0004388 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 1.4e-07 59.7 44 63.6
CSS0014293 Camellia sinensis var. sinensis HOM05D001017 ORTHO05D001025 1.4e-07 59.7 44 63.6
FAN18G0747 Fragaria x ananassa HOM05D001017 ORTHO05D001025 1.4e-07 59.7 88 42.0
SGA_v2.0_scaffold19G08820 Striga asiatica HOM05D001017 ORTHO05D001025 1.4e-07 59.7 44 63.6
ATR0691G125 Amborella trichopoda HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 63.6
ATR0761G001 Amborella trichopoda HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 63.6
Aqoxy3G03827 Aquilegia oxysepala HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 63.6
arahy.Tifrunner.gnm1.ann1.LPU4ZQ Arachis hypogaea HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 61.4
EL10Ac5g11214 Beta vulgaris HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 63.6
AUR62032160 Chenopodium quinoa HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 63.6
AUR62036916 Chenopodium quinoa HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 63.6
DCAR_011329 Daucus carota HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 63.6
Lj1g0027517 Lotus japonicus HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 61.4
Lalb_Chr08g0235231 Lupinus albus HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 61.4
Lalb_Chr23g0274081 Lupinus albus HOM05D001017 ORTHO05D001025 1.9e-07 59.3 44 61.4
MSTRG.4500 Avicennia marina HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
CANSAT80G1433 Cannabis sativa HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
COL.COLO4_08659 Corchorus olitorius HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
MBI14_g25914_MAGBIO Magnolia biondii HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
MBI14_g40262_MAGBIO Magnolia biondii HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
Nn4g23631 Nelumbo nucifera HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
Pp3c15_4000 Physcomitrium patens HOM05D001017 ORTHO05D001025 2.5e-07 58.9 48 56.2
Prupe.5G212800 Prunus persica HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
Rhsim11G0054300 Rhododendron simsii HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
Sed0009727 Sechium edule HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
TWI81G0795 Tripterygium wilfordii HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
TAR371G0828 Trochodendron aralioides HOM05D001017 ORTHO05D001025 2.5e-07 58.9 44 61.4
arahy.Tifrunner.gnm1.ann1.533ER3 Arachis hypogaea HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 61.4
Ca_02684_v3 Cicer arietinum L. HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 61.4
Glyma.06G208200 Glycine max HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 61.4
Medtr2g056190 Medicago truncatula HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 61.4
Nn3g17627 Nelumbo nucifera HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 59.1
Os09g0375000 Oryza sativa ssp. japonica HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 61.4
Phvul.009G191100 Phaseolus vulgaris HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 61.4
Psat1g028040 Pisum sativum HOM05D001017 ORTHO05D001025 3.2e-07 58.5 42 64.3
VMungo1309G2826 Vigna mungo HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 61.4
Zm00001eb098760 Zea mays HOM05D001017 ORTHO05D001025 3.2e-07 58.5 44 61.4
Cpa.g.sc13.89 Carica papaya HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
Dinv36855 Davidia involucrata HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
Migut.I00359 Erythranthe guttata HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
FvH4_5g12990 Fragaria vesca HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
FAN08G3272 Fragaria x ananassa HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 4.2e-07 58.2 44 61.4
Glyma.04G144300 Glycine max HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
PGR083G2648 Punica granatum HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
RcHm_v2.0_Chr7g0184181 Rosa chinensis HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
SalBow5G2543 Salvia bowleyana HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
TPR.G21308 Trifolium pratense HOM05D001017 ORTHO05D001025 4.2e-07 58.2 44 61.4
CiPaw.15G122000 Carya illinoinensis HOM05D001017 ORTHO05D001025 5.5e-07 57.8 44 61.4
Hund09979 Selenicereus undatus HOM05D001017 ORTHO05D001025 5.5e-07 57.8 44 63.6
Lsat_1_v5_gn_4_111601 Lactuca sativa HOM05D001017 ORTHO05D001025 7.2e-07 57.4 44 59.1
Ciclev10020008m.g Citrus clementina HOM05D001017 ORTHO05D001025 9.3e-07 57.0 44 61.4
MSTRG.9573 Avicennia marina HOM05D001017 ORTHO05D001025 1.2e-06 56.6 36 69.4
Potri.012G057500 Populus trichocarpa HOM05D001017 ORTHO05D001025 1.2e-06 56.6 98 36.7
Sc04g0004050 Simmondsia chinensis HOM05D001017 ORTHO05D001025 1.2e-06 56.6 44 61.4
Actinidia31042 Actinidia chinensis HOM05D001017 ORTHO05D001025 1.6e-06 56.2 43 60.5
CDE02G2048 Ceratophyllum demersum HOM05D001017 ORTHO05D001025 1.6e-06 56.2 44 61.4
CBR_g19863 Chara braunii HOM05D001017 ORTHO05D001025 1.6e-06 56.2 39 61.5
BcaC08g46838 Brassica carinata HOM05D001017 ORTHO05D001025 2.1e-06 55.8 46 56.5
Sabra12G0042400 Salix brachista HOM05D001017 ORTHO05D001025 2.1e-06 55.8 92 37.0
Zm00001eb311450 Zea mays HOM05D001017 ORTHO05D001025 2.1e-06 55.8 44 61.4
Cre12.g513200 Chlamydomonas reinhardtii HOM05D001017 ORTHO05D001025 6.1e-06 54.3 39 59.0


User provided reference genes

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