Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 0.0e+00 1155.2 756 100.0
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 0.0e+00 1087.0 756 91.9
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 1.1e-267 926.8 756 82.8
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 8.3e-252 874.0 754 80.1
PGSC0003DMG400020237 Solanum tuberosum HOM05D004735 ORTHO05D005243 1.7e-236 823.2 429 95.3
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 9.5e-232 807.4 793 70.0
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 4.0e-230 802.0 754 72.3
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 1.7e-111 407.9 758 39.1
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 2.9e-103 380.6 764 37.3
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 9.3e-102 375.6 758 36.0
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 1.3e-100 371.7 762 34.4
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.9e-100 370.2 766 38.4
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 1.3e-95 355.1 769 34.3
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 8.4e-87 325.9 758 36.4
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 8.4e-87 325.9 761 31.9
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 1.9e-86 324.7 759 33.6
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 6.0e-85 319.7 762 31.0
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 6.0e-85 319.7 759 32.1
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 1.1e-81 308.9 757 30.6
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 9.0e-81 305.8 758 43.3
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 2.6e-80 304.3 759 31.0
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 7.6e-80 302.8 779 33.8
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 1.3e-79 302.0 768 35.9
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 2.9e-79 300.8 757 33.7
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 4.9e-79 300.1 785 32.1
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 1.4e-78 298.5 755 28.7
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 3.2e-78 297.4 757 31.6
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 4.2e-78 297.0 771 30.6
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 2.7e-77 294.3 758 29.0
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 2.7e-77 294.3 785 31.3
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 4.6e-77 293.5 756 37.2
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 1.3e-76 292.0 760 29.9
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 1.8e-76 291.6 760 30.3
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.1e-75 288.9 773 32.6
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 2.1e-74 284.6 761 32.1
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 4.8e-74 283.5 772 30.2
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 1.1e-73 282.3 774 31.0
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 1.8e-73 281.6 786 28.8
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.4e-72 277.3 759 29.4
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.2e-71 274.6 759 29.2
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 2.9e-71 274.2 762 29.1
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 5.0e-71 273.5 761 29.4
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.1e-70 272.3 752 28.5
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.9e-70 271.6 752 28.9
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 7.2e-70 269.6 774 30.9
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 2.1e-69 268.1 766 29.0
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.3e-68 265.4 768 31.0
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 3.7e-66 257.3 762 28.5
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 8.2e-66 256.1 781 36.2
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 2.4e-65 254.6 759 35.8
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 4.1e-65 253.8 373 39.9
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.6e-64 251.1 763 29.0
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 1.9e-62 245.0 791 34.3
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 5.5e-62 243.4 763 31.1
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 2.7e-61 241.1 769 31.2
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 4.6e-61 240.4 634 28.9
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 1.8e-60 238.4 770 28.4
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 3.9e-60 237.3 758 28.0
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 3.9e-60 237.3 758 28.0
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 6.7e-60 236.5 760 39.2
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 6.7e-60 236.5 758 27.6
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 2.0e-59 235.0 758 27.8
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 4.8e-58 230.3 766 27.4
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 4.8e-58 230.3 782 28.6
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 8.2e-58 229.6 765 27.3
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 8.2e-58 229.6 760 25.3
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.1e-57 227.6 766 27.4
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 3.1e-57 227.6 457 34.6
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 4.5e-56 223.8 762 35.7
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 6.5e-55 219.9 799 36.3
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 1.1e-54 219.2 760 32.5
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 1.1e-54 219.2 764 25.0
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 9.4e-54 216.1 786 25.6
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 4.7e-53 213.8 759 30.2
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 1.4e-52 212.2 770 34.8
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 1.4e-52 212.2 758 25.1
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 3.9e-52 210.7 782 31.3
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 2.0e-51 208.4 769 35.1
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 2.8e-50 204.5 771 32.0
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 5.3e-49 200.3 780 32.9
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 2.0e-48 198.4 795 39.4
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 7.7e-48 196.4 491 31.0
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 7.2e-46 189.9 801 36.3
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 6.1e-45 186.8 767 32.7
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 8.0e-45 186.4 536 34.7
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 1.1e-43 182.6 410 29.5
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 4.4e-43 180.6 813 25.0
Cc07_g01360 Coffea canephora HOM05D004735 ORTHO05D005243 5.7e-43 180.3 199 47.7
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.3e-42 179.1 768 27.6
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 5.2e-36 157.1 259 32.8
Dinv33274 Davidia involucrata HOM05D004735 ORTHO05D005243 8.8e-36 156.4 168 50.0
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 3.7e-34 151.0 260 36.5
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 1.1e-33 149.4 727 26.7
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.8e-33 148.7 802 22.7
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 5.4e-33 147.1 784 27.4
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 7.0e-33 146.7 761 25.0
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 1.2e-32 146.0 791 23.8
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 5.9e-32 143.7 786 23.4
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 7.7e-32 143.3 259 35.9
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 8.5e-31 139.8 767 24.1
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 1.1e-30 139.4 117 56.4
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 3.2e-30 137.9 117 58.1
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 1.2e-29 136.0 803 23.3
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 1.8e-28 132.1 795 22.6
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 1.5e-27 129.0 804 25.7
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.2e-26 125.2 536 24.4
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 2.8e-26 124.8 809 23.1
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 1.1e-25 122.9 794 22.9
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 1.4e-25 122.5 791 22.8
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 1.4e-25 122.5 118 50.0
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 1.8e-25 122.1 808 23.8
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 9.2e-25 119.8 116 54.3
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 1.2e-24 119.4 800 23.1
CSS0011678 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.7e-24 118.2 121 50.4
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 3.5e-24 117.9 801 23.3
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 2.5e-22 111.7 122 48.4
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 5.6e-22 110.5 122 47.5
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 1.2e-21 109.4 120 48.3
BcaC04g19065 Brassica carinata HOM05D004735 ORTHO05D005243 4.7e-21 107.5 341 29.0
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 1.8e-20 105.5 816 22.7
CSS0009912 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.0e-20 104.4 94 53.2
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 5.2e-20 104.0 526 22.6
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 2.6e-19 101.7 131 41.2
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 1.8e-17 95.5 778 24.8
Psat7g164720 Pisum sativum HOM05D000121 ORTHO05D000102 1.1e-14 86.3 102 42.2
TPR.G28482 Trifolium pratense HOM05D004735 ORTHO05D005243 1.5e-14 85.9 82 51.2
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 2.5e-14 85.1 115 37.4
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 2.5e-14 85.1 88 45.5
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 5.6e-14 84.0 788 21.3
Oeu062522.1 Olea europaea HOM05D004735 ORTHO05D005243 1.2e-13 82.8 154 33.8
BolC2t06598H Brassica oleracea HOM05D000139 ORTHO05D000103 2.8e-13 81.6 84 47.6
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 8.0e-13 80.1 135 34.1
C02p06510 Brassica napus HOM05D000139 ORTHO05D000103 1.0e-12 79.7 84 46.4
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 1.1e-09 69.7 117 33.3
unitig_0.g1643 Utricularia gibba HOM05D004735 ORTHO05D005243 5.0e-07 60.8 143 31.5
CSS0016869 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.3e-06 57.8 72 48.6


User provided reference genes

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