Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 2.6e-147 525.4 271 100.0
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 3.1e-132 475.3 252 98.0
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.2e-128 463.4 252 96.4
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.1e-121 440.3 253 90.9
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 2.9e-98 362.5 252 77.8
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 3.2e-97 359.0 252 77.0
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 4.7e-88 328.6 252 70.2
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.9e-87 325.5 252 67.9
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 4.8e-85 318.5 247 67.6
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 3.1e-84 315.8 252 66.7
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.1e-84 315.8 252 65.9
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 5.3e-84 315.1 254 64.2
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.0e-83 313.2 255 66.7
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.6e-83 312.8 252 65.1
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.0e-82 310.8 253 68.0
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.2e-82 309.7 252 63.9
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 6.5e-82 308.1 227 76.2
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.7e-80 302.8 253 65.2
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 4.7e-80 302.0 256 63.7
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 6.1e-80 301.6 254 62.6
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.8e-79 300.1 254 64.2
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 3.9e-79 298.9 286 57.7
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 6.7e-79 298.1 255 63.9
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 2.0e-78 296.6 256 64.5
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.6e-78 296.2 243 63.8
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.6e-78 296.2 253 62.5
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 4.4e-78 295.4 234 69.7
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 5.7e-78 295.0 239 64.9
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.2e-77 293.1 258 63.2
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.8e-77 292.0 256 63.3
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 6.3e-77 291.6 250 60.8
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.2e-77 291.2 258 63.2
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.4e-76 290.4 257 62.3
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.8e-76 290.0 256 63.3
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.4e-76 289.7 235 64.3
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 5.3e-76 288.5 260 62.3
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 7.0e-76 288.1 250 62.4
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 9.1e-76 287.7 259 62.5
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 9.1e-76 287.7 258 60.5
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 9.1e-76 287.7 235 66.0
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 2.6e-75 286.2 275 58.9
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 4.5e-75 285.4 256 62.5
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 4.5e-75 285.4 250 61.2
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 4.5e-75 285.4 255 62.4
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 7.7e-75 284.6 227 66.1
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.3e-74 283.9 253 63.6
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.9e-74 282.7 288 58.7
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 2.9e-74 282.7 253 60.5
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.9e-74 282.7 253 62.8
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.5e-74 281.6 260 61.9
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.5e-73 280.4 246 63.0
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.5e-73 280.4 256 62.1
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.5e-73 280.4 254 60.2
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.5e-73 279.6 257 62.3
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.5e-73 278.5 257 62.3
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 9.4e-73 277.7 261 60.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.6e-72 276.9 242 62.8
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.6e-72 276.9 258 62.4
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.1e-72 276.6 244 61.9
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.7e-72 276.2 234 64.1
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.7e-72 276.2 234 64.5
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 3.6e-72 275.8 256 61.7
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 4.7e-72 275.4 242 59.9
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 6.1e-72 275.0 230 62.6
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 6.1e-72 275.0 284 54.2
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 8.0e-72 274.6 255 59.2
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.0e-71 274.2 234 61.1
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.4e-71 273.9 249 59.8
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.3e-71 273.1 255 61.2
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.3e-71 273.1 284 53.9
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 5.2e-71 271.9 276 58.3
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.2e-70 270.8 255 57.6
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.2e-70 270.8 227 63.4
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 2.6e-70 269.6 260 60.8
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 9.7e-70 267.7 231 62.3
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 9.7e-70 267.7 260 60.0
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 9.7e-70 267.7 242 57.9
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 9.7e-70 267.7 244 60.7
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.3e-69 267.3 254 56.7
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.3e-69 267.3 245 59.2
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.7e-69 266.9 256 60.5
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 4.8e-69 265.4 256 58.6
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 4.8e-69 265.4 244 61.1
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 8.2e-69 264.6 257 58.8
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 1.1e-68 264.2 256 59.0
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.8e-68 263.5 255 56.5
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 2.4e-68 263.1 274 55.8
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 4.1e-68 262.3 255 58.8
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.1e-68 262.3 250 56.8
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 5.3e-68 261.9 244 58.2
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 9.1e-68 261.2 241 59.8
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.2e-67 260.8 258 58.1
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.2e-67 260.8 198 70.2
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.2e-67 260.8 227 61.2
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.2e-67 260.8 234 61.1
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 2.7e-67 259.6 229 59.8
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 4.5e-67 258.8 248 57.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 5.9e-67 258.5 255 57.6
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.7e-66 256.9 207 66.7
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.2e-66 256.5 198 66.7
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.5e-65 253.8 259 55.6
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.5e-65 253.8 232 61.2
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.5e-65 253.8 243 56.4
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 3.2e-65 252.7 246 58.5
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.1e-64 250.0 253 56.1
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.1e-64 250.0 253 56.1
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 4.7e-64 248.8 253 56.1
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.8e-63 246.9 166 76.5
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 8.8e-63 244.6 254 55.9
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.5e-62 243.8 254 56.3
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.0e-62 243.4 249 56.2
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.3e-61 240.7 251 55.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.2e-61 240.0 249 53.4
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.2e-61 240.0 249 53.4
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.2e-59 234.2 246 54.5
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.6e-59 233.8 236 55.5
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 2.3e-58 229.9 169 68.6
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 5.0e-58 228.8 255 52.9
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 5.0e-58 228.8 192 61.5
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 4.7e-56 222.2 234 55.1
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 5.7e-54 215.3 204 56.9
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 3.5e-51 206.1 260 46.5
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.3e-50 203.4 173 63.6
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 3.8e-50 202.6 237 50.2
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 9.5e-49 198.0 256 47.3
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 8.9e-47 191.4 120 77.5
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.2e-45 186.8 157 61.8
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 4.9e-45 185.7 238 47.5
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.6e-43 179.1 249 47.8
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.3e-42 177.6 203 54.7
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 5.0e-42 175.6 167 57.5
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 3.6e-40 169.5 131 62.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.1e-39 167.9 123 67.5
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.1e-36 157.9 231 42.4
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 4.1e-36 156.0 115 75.7
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 3.9e-34 149.4 226 42.5
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.1e-31 141.4 215 45.6
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 6.4e-29 132.1 82 75.6
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.0e-26 123.2 128 51.6
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.5e-25 120.9 127 51.2
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.5e-25 120.9 128 50.8
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.5e-25 120.9 147 50.3
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 7.3e-25 118.6 118 55.9
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 7.3e-25 118.6 118 55.9
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 7.3e-25 118.6 118 55.9
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.8e-24 116.7 169 47.3
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.7e-21 107.5 117 50.4
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.4e-15 87.8 247 32.0
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.2e-14 84.7 192 35.9
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.5e-14 84.3 102 54.9
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 1.4e-12 77.8 103 47.6
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 2.4e-12 77.0 101 44.6
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 3.5e-11 73.2 72 56.9
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.5e-09 67.8 57 64.9
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 4.8e-08 62.8 44 65.9
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 4.8e-08 62.8 160 30.0
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.4e-07 61.2 127 33.9
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.4e-07 61.2 158 31.0
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 4.0e-07 59.7 114 36.0
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 6.9e-07 58.9 116 36.2
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 2.0e-06 57.4 36 72.2
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 2.6e-06 57.0 180 28.9
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 4.5e-06 56.2 130 32.3
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.8e-06 55.8 132 30.3
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 5.8e-06 55.8 142 30.3
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 7.6e-06 55.5 160 29.4
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 9.9e-06 55.1 157 27.4
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 9.9e-06 55.1 206 27.2
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 9.9e-06 55.1 195 26.2


User provided reference genes

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