Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 9.0e-190 666.8 340 100.0
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 2.1e-186 655.6 340 98.5
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 1.2e-181 639.8 340 96.2
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 2.0e-157 559.3 341 85.6
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 7.7e-149 530.8 344 82.0
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.7e-148 529.6 339 81.4
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 6.8e-137 491.1 344 73.5
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 1.7e-132 476.5 338 72.5
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 1.5e-131 473.4 338 72.8
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.8e-130 469.2 337 71.2
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 3.6e-130 468.8 335 74.0
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.7e-130 468.4 337 71.2
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 6.8e-129 464.5 344 71.2
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 1.2e-128 463.8 341 70.7
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 1.5e-128 463.4 337 71.8
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 2.0e-128 463.0 344 70.1
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 4.4e-128 461.8 341 69.8
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 6.4e-127 458.0 337 72.4
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 8.3e-127 457.6 342 69.3
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 8.3e-127 457.6 342 70.8
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 1.4e-126 456.8 337 70.9
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 1.4e-126 456.8 324 71.9
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 1.9e-126 456.4 345 71.3
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 2.4e-126 456.1 336 71.1
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 3.2e-126 455.7 340 69.7
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.4e-126 454.9 327 71.9
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 1.6e-125 453.4 319 70.8
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.6e-125 453.4 338 70.1
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 3.5e-125 452.2 341 70.1
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 3.5e-125 452.2 331 70.4
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 4.6e-125 451.8 313 73.2
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 4.6e-125 451.8 341 69.8
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 1.0e-124 450.7 341 68.9
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 1.0e-124 450.7 348 67.2
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.7e-124 449.9 342 68.1
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.7e-124 449.9 342 67.8
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 3.0e-124 449.1 390 63.1
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 3.0e-124 449.1 349 67.9
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 3.9e-124 448.7 344 68.3
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 3.9e-124 448.7 340 70.3
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 5.1e-124 448.4 337 69.4
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 1.1e-123 447.2 333 68.5
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 1.5e-123 446.8 338 68.3
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 1.9e-123 446.4 338 69.5
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 2.5e-123 446.0 339 68.1
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 2.5e-123 446.0 330 69.4
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 3.3e-123 445.7 341 68.0
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 4.3e-123 445.3 344 68.0
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 9.5e-123 444.1 346 68.8
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 1.6e-122 443.4 319 71.5
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 1.6e-122 443.4 341 67.4
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 2.1e-122 443.0 341 68.9
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 3.6e-122 442.2 337 69.1
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 3.1e-121 439.1 341 66.6
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 4.0e-121 438.7 340 67.6
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 6.8e-121 438.0 348 67.0
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 8.9e-121 437.6 308 72.4
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 3.4e-120 435.6 343 67.6
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 9.9e-120 434.1 275 77.5
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 1.7e-119 433.3 338 67.5
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 1.7e-119 433.3 341 65.1
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 2.2e-119 433.0 270 78.1
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 2.2e-119 433.0 270 78.1
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 2.2e-119 433.0 270 78.1
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 1.4e-118 430.3 340 66.2
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 1.4e-118 430.3 327 69.1
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 2.4e-118 429.5 249 82.3
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 7.1e-118 427.9 315 68.6
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 9.2e-118 427.6 342 65.2
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 9.2e-118 427.6 295 74.9
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 2.1e-117 426.4 249 81.9
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 3.5e-117 425.6 249 81.9
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 4.6e-117 425.2 304 73.0
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 6.0e-117 424.9 335 67.5
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 6.0e-117 424.9 315 68.3
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 1.0e-116 424.1 342 66.7
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 1.0e-116 424.1 274 77.7
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 1.3e-116 423.7 328 66.5
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 1.3e-116 423.7 341 65.1
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 1.9e-115 419.9 271 74.5
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 1.2e-114 417.2 270 76.7
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 2.1e-114 416.4 338 64.5
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 2.1e-114 416.4 340 64.4
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 6.2e-114 414.8 339 63.7
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 1.1e-113 414.1 340 64.1
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 1.8e-113 413.3 252 79.0
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 2.4e-113 412.9 338 65.1
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 2.4e-113 412.9 338 65.1
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 1.2e-112 410.6 337 64.1
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 1.2e-112 410.6 337 64.1
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 5.8e-112 408.3 273 72.9
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 7.6e-112 407.9 337 64.7
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 2.9e-111 406.0 337 63.2
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 4.9e-111 405.2 416 55.8
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 1.9e-110 403.3 341 62.8
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.9e-110 403.3 321 63.9
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 4.2e-110 402.1 338 63.6
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 7.1e-110 401.4 275 73.8
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 2.7e-109 399.4 257 75.5
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 4.6e-109 398.7 309 69.9
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 6.2e-106 388.3 337 61.1
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 2.4e-105 386.3 304 67.4
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 2.4e-105 386.3 251 74.5
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 3.4e-104 382.5 337 61.4
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 3.5e-101 372.5 272 69.1
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 1.1e-99 367.5 239 75.7
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 2.8e-98 362.8 334 60.5
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 2.0e-96 356.7 281 63.3
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.7e-95 353.6 352 57.7
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 3.2e-86 322.8 288 56.9
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 3.5e-85 319.3 233 70.8
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 4.6e-85 318.9 344 56.7
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 1.4e-81 307.4 212 75.9
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 6.1e-77 292.0 309 54.4
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 5.0e-71 272.3 212 67.0
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 6.5e-71 271.9 211 69.2
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 3.2e-62 243.0 218 61.0
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 5.5e-62 242.3 262 48.1
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 1.0e-60 238.0 151 76.2
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 4.4e-59 232.6 236 50.8
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 1.7e-58 230.7 260 46.5
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 4.5e-56 222.6 211 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 1.0e-55 221.5 258 45.0
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 6.7e-52 208.8 170 65.9
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 6.7e-52 208.8 127 80.3
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 6.7e-52 208.8 127 80.3
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 5.7e-51 205.7 248 44.0
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 1.4e-49 201.1 126 78.6
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 2.6e-48 196.8 109 85.3
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 2.0e-43 180.6 236 38.6
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 1.1e-41 174.9 249 39.0
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 2.8e-34 150.2 90 83.3
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 3.1e-33 146.7 124 64.5
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 2.0e-32 144.1 100 70.0
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 3.8e-31 139.8 115 66.1
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 1.7e-26 124.4 215 33.5
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 1.6e-24 117.9 99 61.6
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 4.6e-24 116.3 65 83.1
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 1.7e-23 114.4 65 81.5
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 3.9e-23 113.2 65 81.5
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.8e-21 107.1 129 50.4
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.8e-21 107.1 129 50.4
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 4.7e-21 106.3 91 60.4
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 1.0e-20 105.1 91 63.7
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 3.1e-20 103.6 90 56.7
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 9.2e-17 92.0 154 37.7
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 2.7e-16 90.5 50 82.0
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 2.7e-16 90.5 52 80.8
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 1.3e-15 88.2 60 70.0
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 7.3e-14 82.4 47 80.9
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 1.6e-13 81.3 160 38.8
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.1e-09 68.6 46 69.6
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.9e-06 57.8 92 46.7


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