Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 2.6e-136 488.8 264 100.0
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 1.4e-134 483.0 264 98.1
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 6.7e-116 421.0 265 85.3
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.1e-115 420.2 265 87.2
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 6.5e-95 351.3 271 73.4
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 9.2e-81 304.3 276 65.6
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 3.5e-80 302.4 287 64.1
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 8.6e-79 297.7 260 60.8
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.5e-78 297.0 248 66.5
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 7.3e-78 294.7 262 61.8
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 1.5e-75 287.0 254 62.2
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 7.5e-75 284.6 247 62.3
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 7.5e-75 284.6 264 60.6
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 1.1e-73 280.8 273 59.0
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 2.4e-73 279.6 265 60.8
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.7e-71 273.5 270 58.5
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.4e-68 263.8 302 54.6
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 2.6e-67 259.6 261 56.3
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 1.7e-66 256.9 222 64.9
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 2.2e-66 256.5 258 57.0
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.9e-65 253.4 261 59.0
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 3.2e-65 252.7 247 59.1
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 3.2e-65 252.7 247 54.7
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 5.4e-65 251.9 250 60.0
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 7.8e-64 248.1 242 56.6
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 7.8e-64 248.1 264 56.8
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 1.0e-63 247.7 249 57.0
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.3e-63 247.3 251 58.2
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.7e-63 246.9 242 55.4
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 3.9e-63 245.7 242 59.1
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 5.0e-63 245.4 266 54.1
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.5e-62 243.8 234 60.7
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 1.9e-62 243.4 249 56.6
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.1e-61 240.0 267 55.4
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 4.7e-61 238.8 253 55.7
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 4.7e-61 238.8 255 56.1
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 4.7e-61 238.8 254 56.7
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 1.4e-60 237.3 251 56.6
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 1.4e-60 237.3 250 57.2
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 3.1e-60 236.1 271 53.1
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 3.1e-60 236.1 266 51.1
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 8.9e-60 234.6 251 54.2
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 1.2e-59 234.2 254 55.9
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 2.0e-59 233.4 257 53.7
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 1.3e-58 230.7 256 53.5
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 2.2e-58 229.9 278 52.2
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 2.9e-58 229.6 246 52.0
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 3.7e-58 229.2 304 49.0
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 3.7e-58 229.2 251 55.8
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 6.4e-58 228.4 249 56.6
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 8.3e-58 228.0 253 54.5
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.9e-57 226.9 259 52.9
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.9e-57 226.9 260 55.0
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 3.2e-57 226.1 258 51.2
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 4.1e-57 225.7 253 54.5
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 4.1e-57 225.7 259 52.1
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 7.1e-57 224.9 282 51.1
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.2e-56 224.2 247 54.3
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 2.1e-56 223.4 246 54.9
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.7e-56 223.0 261 50.2
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.7e-56 223.0 247 55.1
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 3.5e-56 222.6 286 50.0
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 6.0e-56 221.9 246 54.9
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.0e-55 221.1 278 50.7
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 3.0e-55 219.5 279 49.5
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 3.9e-55 219.2 264 54.5
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 5.1e-55 218.8 251 54.2
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 6.6e-55 218.4 272 49.3
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 1.5e-54 217.2 261 51.0
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 5.6e-54 215.3 298 46.6
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.3e-54 214.9 278 50.4
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 9.5e-54 214.5 268 50.0
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 2.1e-53 213.4 253 53.4
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 4.7e-53 212.2 253 53.4
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 6.2e-53 211.8 256 50.0
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.1e-52 209.5 274 50.7
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.1e-52 209.5 253 53.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 3.4e-51 206.1 257 50.6
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.9e-49 200.3 249 45.4
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 4.1e-49 199.1 206 55.8
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 7.1e-49 198.4 223 53.4
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 4.6e-48 195.7 223 51.6
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 1.0e-47 194.5 261 45.6
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.3e-47 194.1 261 48.3
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 2.3e-47 193.4 203 54.7
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 2.3e-47 193.4 201 56.2
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 6.6e-47 191.8 202 55.4
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 6.6e-47 191.8 263 48.7
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 8.6e-47 191.4 229 51.5
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 1.5e-46 190.7 205 55.1
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 3.3e-46 189.5 225 52.0
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 9.6e-46 188.0 259 47.9
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 9.6e-46 188.0 202 54.5
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.1e-45 186.8 246 45.1
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.8e-45 186.4 207 54.6
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 2.8e-45 186.4 222 51.8
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 3.6e-45 186.0 222 51.8
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 4.7e-45 185.7 230 51.3
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 4.7e-45 185.7 194 56.2
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 4.7e-45 185.7 256 46.9
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 8.1e-45 184.9 205 53.7
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.4e-44 184.1 283 45.2
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.4e-44 183.3 199 54.8
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.1e-44 183.0 229 49.8
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-43 181.0 204 53.9
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.6e-43 179.9 244 46.3
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 3.4e-43 179.5 262 45.0
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 3.4e-43 179.5 268 42.5
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.7e-42 177.2 102 79.4
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 1.7e-42 177.2 247 44.1
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 2.2e-42 176.8 233 49.8
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 4.2e-41 172.6 242 45.9
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 4.6e-40 169.1 121 67.8
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.7e-39 167.2 247 44.1
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 5.1e-39 165.6 133 61.7
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 5.1e-39 165.6 242 42.1
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.9e-38 163.7 238 44.5
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.5e-38 163.3 244 43.0
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 9.6e-38 161.4 250 43.2
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 2.1e-37 160.2 104 70.2
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 6.2e-37 158.7 248 43.1
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 1.8e-36 157.1 238 42.9
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.4e-36 156.8 101 70.3
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 4.0e-36 156.0 250 42.0
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 6.9e-36 155.2 238 43.3
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 9.9e-35 151.4 251 41.0
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 4.2e-33 146.0 249 42.2
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.6e-32 144.1 252 40.9
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 3.5e-32 142.9 249 42.6
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 7.4e-30 135.2 268 32.5
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 3.6e-29 132.9 280 36.1
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 4.5e-27 125.9 130 47.7
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.7e-26 124.0 100 58.0
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 6.4e-26 122.1 231 35.5
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-25 121.3 165 44.8
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 4.2e-25 119.4 127 49.6
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 4.2e-25 119.4 127 49.6
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 7.1e-25 118.6 258 34.9
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 1.3e-23 114.4 295 32.2
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 2.3e-23 113.6 120 47.5
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 5.1e-23 112.5 168 42.3
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 5.1e-23 112.5 86 59.3
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-22 111.3 222 34.7
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.5e-22 110.9 84 60.7
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 2.5e-22 110.2 251 32.7
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.4e-20 104.4 112 50.0
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 2.4e-20 103.6 90 54.4
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 9.0e-20 101.7 86 55.8
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 1.0e-18 98.2 69 65.2
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.9e-18 95.9 79 60.8
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 4.9e-18 95.9 178 38.2
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 3.4e-11 73.2 337 27.6
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.5e-11 72.8 121 36.4
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 1.0e-10 71.6 78 56.4
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 6.1e-08 62.4 92 44.6
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 7.4e-06 55.5 38 71.1
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 9.7e-06 55.1 72 41.7


User provided reference genes

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