Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 5.5e-114 414.5 231 100.0
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 1.2e-113 413.3 231 99.6
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 1.6e-113 412.9 231 99.6
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 1.5e-108 396.4 231 94.4
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 2.3e-104 382.5 231 91.3
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 4.4e-103 378.3 231 91.3
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 9.7e-103 377.1 224 92.0
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 4.1e-85 318.5 209 84.7
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 6.5e-83 311.2 212 71.2
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 1.9e-82 309.7 216 77.8
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 5.5e-82 308.1 222 79.7
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 1.2e-81 307.0 225 74.2
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 2.3e-80 302.8 225 74.2
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 3.0e-80 302.4 214 77.1
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 3.0e-80 302.4 215 77.7
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 4.0e-80 302.0 212 78.8
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 8.9e-80 300.8 216 73.6
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 2.6e-79 299.3 209 80.4
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 3.4e-79 298.9 219 74.9
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 4.4e-79 298.5 217 76.0
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 5.7e-79 298.1 224 70.1
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 7.5e-79 297.7 212 77.4
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 9.8e-79 297.4 217 70.0
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 9.8e-79 297.4 217 70.0
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 9.8e-79 297.4 212 76.4
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.2e-78 296.2 217 75.1
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 2.2e-78 296.2 216 75.5
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.2e-78 296.2 209 76.6
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 4.9e-78 295.0 212 76.9
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 4.9e-78 295.0 218 74.3
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 6.3e-78 294.7 212 76.9
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 6.3e-78 294.7 212 76.9
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 6.3e-78 294.7 209 77.5
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 8.3e-78 294.3 214 73.8
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 1.1e-77 293.9 217 74.7
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 1.4e-77 293.5 217 74.7
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 1.8e-77 293.1 218 75.2
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 2.4e-77 292.7 217 74.2
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 2.4e-77 292.7 212 76.4
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 3.1e-77 292.4 212 75.5
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 9.2e-77 290.8 209 74.2
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.0e-76 289.7 217 73.7
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 5.9e-76 288.1 217 73.7
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 7.8e-76 287.7 218 64.7
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 7.8e-76 287.7 210 76.2
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 1.3e-75 287.0 216 73.6
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 1.7e-75 286.6 166 80.7
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 2.3e-75 286.2 218 65.6
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 3.8e-75 285.4 226 61.1
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 3.8e-75 285.4 218 64.2
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 8.6e-75 284.3 209 73.7
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 8.6e-75 284.3 209 72.7
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 1.1e-74 283.9 216 62.5
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 1.1e-74 283.9 221 73.3
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 1.5e-74 283.5 210 73.8
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 1.5e-74 283.5 211 74.4
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.9e-74 283.1 219 71.2
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 1.9e-74 283.1 211 76.3
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 2.5e-74 282.7 171 77.8
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 3.3e-74 282.3 226 60.2
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 3.3e-74 282.3 218 62.8
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 7.3e-74 281.2 204 66.2
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 2.1e-73 279.6 223 60.5
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 2.1e-73 279.6 218 70.6
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 4.7e-73 278.5 218 61.5
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 4.7e-73 278.5 220 60.9
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 2.3e-72 276.2 216 71.8
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 4.0e-72 275.4 216 71.3
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 4.0e-72 275.4 198 77.8
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 8.9e-72 274.2 216 70.4
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 8.9e-72 274.2 219 70.3
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 1.2e-71 273.9 219 71.7
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 1.2e-71 273.9 209 69.4
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 1.5e-71 273.5 216 69.9
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 2.0e-71 273.1 216 70.4
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 2.6e-71 272.7 209 61.7
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 3.4e-71 272.3 216 69.9
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 4.4e-71 271.9 216 71.3
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 4.4e-71 271.9 216 70.8
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 5.8e-71 271.6 211 71.6
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 5.8e-71 271.6 211 71.6
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 7.5e-71 271.2 211 72.0
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 9.8e-71 270.8 216 70.8
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 9.8e-71 270.8 220 59.5
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 2.2e-70 269.6 210 71.4
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 4.9e-70 268.5 194 75.8
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 4.9e-70 268.5 204 75.0
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 1.9e-69 266.5 204 74.5
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 3.2e-69 265.8 204 72.5
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 5.4e-69 265.0 204 65.2
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 7.0e-69 264.6 209 72.2
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 1.2e-68 263.8 204 65.2
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 3.5e-68 262.3 216 68.1
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 6.0e-68 261.5 267 50.9
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 7.8e-68 261.2 209 70.3
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 1.3e-67 260.4 204 74.5
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 1.7e-67 260.0 209 70.8
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 8.6e-67 257.7 166 72.9
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 1.1e-66 257.3 204 74.0
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 3.3e-66 255.8 204 71.6
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 4.3e-66 255.4 216 57.4
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 9.5e-66 254.2 219 56.2
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 8.0e-65 251.1 204 72.5
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 2.0e-63 246.5 204 60.8
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 2.7e-60 236.1 195 63.1
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 2.7e-60 236.1 209 62.2
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 3.3e-58 229.2 216 53.2
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 5.6e-58 228.4 224 67.4
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 1.7e-54 216.9 212 53.8
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 2.9e-54 216.1 212 51.4
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 6.2e-49 198.4 167 58.7
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 1.4e-48 197.2 204 58.3
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 5.8e-47 191.8 176 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 9.2e-45 184.5 206 54.4
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 8.1e-41 171.4 147 72.1
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 6.9e-40 168.3 139 57.6
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 1.1e-34 151.0 202 49.5
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 4.0e-32 142.5 100 67.0
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 4.9e-22 109.0 97 78.4
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.0e-14 84.7 75 53.3
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 1.9e-10 70.5 45 68.9
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 4.3e-10 69.3 161 30.4
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-08 63.9 108 38.0
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.1e-08 62.8 107 37.4
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 1.2e-07 61.2 111 37.8
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.2e-07 61.2 111 37.8
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 2.6e-07 60.1 157 31.8
FvH4_1g14800 Fragaria vesca HOM05D000710 ORTHO05D000336 2.2e-06 57.0 157 31.2
RcHm_v2.0_Chr2g0103761 Rosa chinensis HOM05D000710 ORTHO05D000336 2.2e-06 57.0 163 30.7
FAN19G1902 Fragaria x ananassa HOM05D000710 ORTHO05D000336 5.0e-06 55.8 157 30.6
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 6.5e-06 55.5 80 33.8
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 6.5e-06 55.5 156 33.3


User provided reference genes

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