Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.0e-207 726.5 358 100.0
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 5.0e-199 697.6 344 99.4
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 3.7e-194 681.4 346 97.1
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 8.6e-183 643.7 345 90.1
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.4e-179 631.7 349 88.8
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 7.6e-179 630.6 345 87.2
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.4e-155 552.0 345 75.9
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 1.3e-154 550.1 345 76.2
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 3.5e-152 542.0 345 73.0
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 1.9e-150 536.2 343 71.7
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.5e-150 535.8 346 73.1
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 2.1e-149 532.7 345 72.8
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 3.7e-149 531.9 349 73.4
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 6.2e-149 531.2 345 72.5
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.2e-147 526.9 345 72.5
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.5e-147 526.6 343 72.6
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 4.5e-147 525.0 345 70.7
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 5.8e-147 524.6 344 70.9
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.3e-146 523.5 374 69.0
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 1.7e-146 523.1 345 71.6
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.7e-146 523.1 346 71.7
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.2e-146 522.7 345 71.6
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 1.9e-145 519.6 345 71.3
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 4.6e-144 515.0 331 74.0
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 2.3e-143 512.7 345 71.0
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 5.1e-143 511.5 349 71.3
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.1e-142 510.4 345 70.1
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.1e-142 510.4 306 77.5
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 4.3e-142 508.4 375 64.8
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.3e-142 508.4 345 69.9
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 7.4e-142 507.7 346 71.4
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.3e-141 506.9 345 69.0
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.6e-141 506.5 354 69.2
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 2.2e-141 506.1 346 69.1
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 2.8e-141 505.8 354 69.5
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 1.1e-140 503.8 348 70.1
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.4e-140 502.7 348 70.7
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 4.1e-140 501.9 339 69.9
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 3.4e-139 498.8 353 70.0
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 3.4e-139 498.8 318 73.3
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 5.9e-139 498.0 349 69.1
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 2.9e-138 495.7 349 67.3
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 3.8e-138 495.4 348 69.3
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 5.0e-138 495.0 349 68.8
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.5e-138 494.6 345 67.5
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 6.5e-138 494.6 348 67.5
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 8.5e-138 494.2 346 69.7
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.1e-137 493.8 346 69.4
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 2.5e-137 492.7 343 68.2
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 3.2e-137 492.3 317 71.0
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 5.5e-137 491.5 347 68.0
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 7.2e-137 491.1 342 69.3
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 2.1e-136 489.6 299 77.9
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.6e-136 488.4 344 68.9
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.0e-135 487.3 345 71.3
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.8e-135 486.5 323 71.2
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.3e-135 486.1 347 66.3
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 4.3e-134 481.9 304 73.7
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 7.4e-134 481.1 346 67.3
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 9.7e-134 480.7 350 66.6
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.3e-133 480.3 316 73.4
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 8.2e-133 477.6 347 66.9
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.8e-132 476.5 306 73.5
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 5.3e-132 474.9 313 72.5
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 5.3e-132 474.9 313 72.5
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 6.9e-132 474.6 305 73.1
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.2e-131 473.8 345 65.5
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.5e-131 473.4 311 73.3
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.4e-131 472.2 311 73.0
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 2.9e-130 469.2 379 60.7
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.8e-130 468.8 346 66.5
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 6.5e-130 468.0 313 71.6
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.4e-129 466.8 346 65.9
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.4e-129 466.8 346 66.2
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.9e-129 466.5 343 67.1
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 2.5e-129 466.1 311 72.0
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 2.7e-128 462.6 279 74.9
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.5e-126 456.8 343 64.1
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.3e-125 453.8 309 70.6
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 2.4e-124 449.5 280 74.3
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 5.3e-124 448.4 350 62.9
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.0e-122 444.1 351 62.4
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.3e-122 443.7 317 67.2
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.8e-122 442.2 285 72.6
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 5.0e-122 441.8 317 67.2
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 8.5e-122 441.0 326 64.7
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.1e-121 440.7 311 67.8
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 1.4e-121 440.3 338 63.0
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 1.2e-120 437.2 318 67.0
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.6e-120 436.8 279 73.5
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 1.6e-120 436.8 316 66.5
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.6e-120 436.8 316 66.5
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.6e-120 435.6 279 74.2
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 8.0e-120 434.5 315 66.3
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 8.0e-120 434.5 326 63.2
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 3.0e-119 432.6 342 61.1
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 3.9e-119 432.2 328 63.7
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 6.7e-119 431.4 307 66.1
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 6.7e-119 431.4 286 71.0
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 9.7e-118 427.6 306 67.0
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 1.4e-116 423.7 308 64.0
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.8e-116 423.3 342 60.8
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 9.1e-116 421.0 350 62.0
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.2e-115 420.6 313 62.3
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.1e-113 414.1 313 62.6
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 1.5e-113 413.7 329 59.9
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 2.5e-113 412.9 315 61.9
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.1e-112 409.8 330 59.1
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 2.1e-112 409.8 315 61.6
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 4.7e-112 408.7 315 61.6
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 4.7e-112 408.7 315 61.6
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.1e-112 408.3 315 61.3
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 8.0e-112 407.9 341 58.1
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 6.7e-111 404.8 315 61.0
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 8.8e-111 404.4 304 62.2
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.1e-108 397.5 321 62.3
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 1.1e-105 387.5 260 70.4
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 3.6e-104 382.5 331 58.9
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 3.0e-103 379.4 385 52.7
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 3.4e-102 375.9 308 61.0
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.8e-101 372.1 282 60.3
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.8e-100 370.2 251 69.3
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 3.1e-100 369.4 310 56.1
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 9.1e-100 367.9 358 54.5
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 3.5e-99 365.9 303 56.1
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 4.5e-99 365.5 358 54.2
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 4.5e-99 365.5 362 54.1
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 3.3e-97 359.4 345 55.7
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 2.1e-96 356.7 323 52.3
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.7e-93 347.1 326 53.7
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.3e-90 337.4 340 53.5
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.0e-87 327.8 318 49.4
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 2.6e-86 323.2 235 62.1
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 4.6e-83 312.4 320 55.0
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 1.9e-81 307.0 309 48.9
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 3.3e-81 306.2 335 46.3
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.2e-78 297.7 228 64.0
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 9.8e-78 294.7 216 66.2
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 3.7e-77 292.7 284 51.1
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.0e-74 283.1 164 78.7
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.3e-69 267.7 204 65.7
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 5.1e-58 229.2 165 62.4
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 5.1e-58 229.2 165 62.4
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 6.6e-58 228.8 140 76.4
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.9e-47 192.2 112 80.4
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 3.2e-44 183.3 337 31.8
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.5e-41 174.5 117 66.7
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.9e-41 174.1 314 36.6
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 6.2e-40 169.1 109 73.4
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 2.7e-35 153.7 334 33.2
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.4e-31 140.6 164 47.0
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 4.9e-29 132.9 129 50.4
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 5.1e-26 122.9 361 30.2
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 7.4e-25 119.0 84 66.7
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 7.7e-22 109.0 166 38.6
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.8e-18 97.8 286 26.6
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 2.2e-16 90.9 105 44.8
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 1.4e-07 61.6 118 35.6


User provided reference genes

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