Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 9.7e-159 563.5 306 100.0
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 7.0e-149 530.8 310 95.2
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 9.5e-130 467.2 310 86.8
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 5.6e-98 361.7 320 70.3
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.5e-95 353.6 333 67.6
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.1e-93 347.4 332 67.2
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 2.6e-63 246.5 313 57.8
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 2.8e-49 199.9 316 45.3
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.3e-46 191.0 315 45.4
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 2.3e-43 180.3 311 44.1
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.0e-42 177.2 292 44.2
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.9e-38 163.3 337 40.9
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 6.5e-38 162.2 325 41.5
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.6e-36 157.5 306 38.6
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.8e-35 154.1 317 38.8
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 2.6e-34 150.2 335 40.6
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 2.6e-34 150.2 309 39.2
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 4.4e-34 149.4 295 38.6
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.7e-34 148.3 319 37.6
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.7e-33 147.5 366 36.6
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.7e-33 146.4 319 37.3
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 6.3e-33 145.6 310 42.9
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 6.3e-33 145.6 298 41.6
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 8.2e-33 145.2 314 39.5
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.4e-32 143.7 299 38.5
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 3.1e-32 143.3 372 37.1
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 4.1e-32 142.9 328 39.0
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 3.5e-31 139.8 383 34.7
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.3e-30 137.9 306 42.5
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.0e-30 136.0 346 39.0
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 6.5e-30 135.6 294 42.2
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.5e-29 132.5 332 35.5
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 7.2e-29 132.1 359 34.5
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.2e-28 131.3 344 38.1
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-28 131.0 329 37.4
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 2.1e-28 130.6 360 35.0
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 6.1e-28 129.0 288 38.9
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 8.0e-28 128.6 337 38.6
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.0e-27 128.3 329 36.2
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-27 127.9 351 38.2
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.4e-27 127.9 352 34.7
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.4e-27 127.9 201 42.8
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 5.2e-27 125.9 335 35.2
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 8.8e-27 125.2 335 38.8
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 7.5e-26 122.1 355 34.4
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 1.3e-25 121.3 326 37.4
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.7e-25 119.8 320 35.9
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 3.7e-25 119.8 342 31.9
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 1.1e-24 118.2 303 39.6
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 2.4e-24 117.1 333 32.7
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 2.4e-24 117.1 279 34.8
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 4.1e-24 116.3 289 36.0
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 7.0e-24 115.5 324 33.0
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.5e-23 113.2 338 33.7
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 3.5e-23 113.2 325 34.5
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 4.5e-23 112.8 374 31.3
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.0e-22 111.7 193 42.5
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.0e-22 111.7 365 32.9
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 2.2e-22 110.5 284 37.3
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 2.9e-22 110.2 303 33.0
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 2.9e-22 110.2 303 33.0
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 5.0e-22 109.4 384 33.1
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 5.0e-22 109.4 328 34.8
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 6.5e-22 109.0 336 35.4
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 8.5e-22 108.6 320 34.4
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.5e-21 107.8 317 34.4
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 3.2e-21 106.7 380 31.6
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 4.2e-21 106.3 337 34.4
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.6e-20 104.4 304 34.5
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.7e-20 103.6 304 35.2
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.7e-20 103.6 304 35.2
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.7e-20 103.6 304 35.2
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 2.7e-20 103.6 336 31.2
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 4.7e-20 102.8 318 36.2
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 6.1e-20 102.4 309 33.7
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 6.1e-20 102.4 325 32.3
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.1e-20 102.4 163 45.4
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 6.1e-20 102.4 302 34.8
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 8.0e-20 102.1 324 31.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 2.3e-19 100.5 329 33.7
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 4.0e-19 99.8 178 42.1
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.2e-18 98.2 328 33.5
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.5e-18 97.8 377 31.0
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 1.5e-18 97.8 312 34.3
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 2.6e-18 97.1 304 36.5
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 2.6e-18 97.1 283 35.0
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 3.4e-18 96.7 304 34.2
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 5.7e-18 95.9 339 31.9
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 7.5e-18 95.5 260 36.2
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.2e-17 94.0 319 31.3
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.2e-17 94.0 324 35.5
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.7e-17 93.2 241 36.5
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 4.9e-17 92.8 288 33.0
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 4.9e-17 92.8 339 37.2
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.4e-16 91.3 318 32.1
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.4e-16 91.3 354 30.8
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.4e-16 90.5 231 36.4
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 5.4e-16 89.4 309 35.3
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.4e-16 89.4 230 35.2
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 5.4e-16 89.4 316 32.9
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 7.0e-16 89.0 363 31.1
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.2e-15 88.2 363 28.9
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.0e-15 87.4 365 28.8
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.5e-15 86.7 363 28.9
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 4.5e-15 86.3 301 32.6
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 4.5e-15 86.3 363 28.9
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 5.9e-15 85.9 390 28.5
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.3e-14 84.7 365 28.8
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 2.9e-14 83.6 370 31.4
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 3.3e-13 80.1 283 31.1
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 3.3e-13 80.1 276 30.4
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 1.2e-12 78.2 355 28.7
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 2.1e-12 77.4 311 31.2
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 2.8e-12 77.0 314 31.5
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 2.8e-12 77.0 309 29.8
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 8.0e-12 75.5 236 31.4
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 8.0e-12 75.5 317 32.5
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 1.8e-11 74.3 300 31.0
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 3.0e-11 73.6 282 30.9
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 4.0e-11 73.2 332 29.8
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 8.9e-11 72.0 285 31.6
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 1.2e-10 71.6 187 36.4
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 1.2e-10 71.6 187 36.4
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.2e-10 71.6 93 48.4
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 4.4e-10 69.7 282 30.5
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 5.7e-10 69.3 331 30.8
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 5.7e-10 69.3 238 33.6
Nitab4.5_0005127g0030 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.7e-09 67.8 128 43.0
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.7e-09 66.6 306 31.0
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 4.9e-09 66.2 247 30.8
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 8.3e-09 65.5 293 29.4
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.1e-08 65.1 307 27.4
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 2.4e-08 63.9 325 29.8
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 1.2e-07 61.6 282 30.1
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.2e-07 61.6 379 26.1
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 1.6e-07 61.2 338 27.5
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 2.0e-07 60.8 285 25.6
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 7.8e-07 58.9 307 28.7
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 1.3e-06 58.2 314 27.4


User provided reference genes

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