Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 6.2e-112 407.5 213 100.0
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 1.1e-108 396.7 216 97.7
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 3.4e-94 348.6 214 89.7
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.7e-69 266.5 223 74.0
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.7e-59 232.6 221 71.0
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 7.7e-54 214.5 236 62.7
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.4e-31 139.8 169 63.9
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 9.2e-31 137.9 220 46.8
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.6e-30 137.1 228 43.9
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 4.5e-30 135.6 218 45.0
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.0e-29 134.4 221 45.2
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 8.6e-29 131.3 222 45.5
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.1e-28 131.0 225 42.7
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.5e-28 130.6 223 44.8
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 5.6e-28 128.6 218 43.6
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.6e-27 127.1 227 42.3
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.0e-26 124.4 230 41.3
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.3e-26 123.2 230 43.9
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 4.0e-26 122.5 230 40.9
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 5.2e-26 122.1 228 41.7
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 8.9e-26 121.3 223 44.8
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.5e-25 120.6 227 40.1
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 2.0e-25 120.2 218 42.7
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 2.0e-25 120.2 226 42.5
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.3e-24 117.5 228 38.6
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.3e-24 117.5 224 42.9
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.2e-24 116.7 219 43.4
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 2.2e-24 116.7 221 41.6
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 2.2e-24 116.7 228 42.1
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 2.2e-24 116.7 220 42.3
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 2.2e-24 116.7 220 42.3
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.9e-24 116.3 217 45.2
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 6.4e-24 115.2 244 40.6
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 8.3e-24 114.8 219 42.5
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.1e-23 114.4 223 40.4
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 3.2e-23 112.8 221 43.4
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 3.2e-23 112.8 220 42.3
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 4.1e-23 112.5 222 42.8
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 4.1e-23 112.5 222 42.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 7.0e-23 111.7 234 39.7
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 9.2e-23 111.3 226 38.1
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.2e-23 111.3 229 38.4
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 9.2e-23 111.3 221 42.1
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 2.0e-22 110.2 227 38.3
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.0e-22 110.2 217 41.0
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 2.0e-22 110.2 213 38.5
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.7e-22 109.8 228 39.9
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.5e-22 109.4 228 39.9
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 5.9e-22 108.6 224 41.1
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 7.8e-22 108.2 245 38.0
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 7.8e-22 108.2 221 40.7
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.0e-21 107.8 214 42.5
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.0e-21 107.8 214 42.5
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.3e-21 107.5 216 38.0
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.0e-21 106.3 231 37.2
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 3.9e-21 105.9 222 41.0
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 5.0e-21 105.5 215 39.5
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 6.6e-21 105.1 242 40.1
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.5e-20 103.2 225 39.6
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 3.3e-20 102.8 227 38.8
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 3.3e-20 102.8 217 40.1
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 5.6e-20 102.1 227 41.0
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 5.6e-20 102.1 219 38.8
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 5.6e-20 102.1 211 37.9
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.5e-20 101.3 214 37.9
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 9.5e-20 101.3 216 41.2
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 9.5e-20 101.3 216 41.2
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 9.5e-20 101.3 218 38.5
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.2e-19 100.9 213 42.7
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.6e-19 100.5 214 36.9
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 4.7e-19 99.0 225 40.0
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 4.7e-19 99.0 218 36.7
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.0e-18 97.8 226 36.3
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.0e-18 97.8 209 37.3
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.4e-18 97.4 214 36.0
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.4e-18 97.4 215 39.1
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.8e-18 97.1 222 36.9
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 4.0e-18 95.9 224 35.7
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 5.2e-18 95.5 212 38.2
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 6.8e-18 95.1 217 39.2
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.9e-18 94.7 214 38.8
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.6e-17 93.2 220 37.7
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 4.4e-17 92.4 211 36.0
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.4e-17 92.4 203 36.5
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 7.5e-17 91.7 227 35.7
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.7e-16 90.5 177 41.8
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.7e-16 90.5 224 36.6
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.9e-16 89.0 212 35.8
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 4.9e-16 89.0 233 34.8
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.9e-16 89.0 154 40.3
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.4e-16 88.6 138 45.7
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 8.3e-16 88.2 216 36.1
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.4e-15 87.4 147 45.6
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.4e-15 87.4 147 45.6
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 2.4e-15 86.7 142 47.2
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 2.4e-15 86.7 230 33.5
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.1e-15 85.9 214 36.9
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.1e-15 85.9 212 34.4
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 5.4e-15 85.5 137 43.1
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 9.2e-15 84.7 117 47.0
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.2e-14 84.3 192 39.1
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.2e-14 84.3 115 47.8
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.7e-14 83.2 214 34.1
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.5e-14 82.8 222 33.8
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.5e-14 82.8 219 36.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.0e-14 82.0 225 34.7
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 6.0e-14 82.0 174 39.7
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.0e-14 82.0 122 42.6
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 7.8e-14 81.6 151 40.4
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 7.8e-14 81.6 151 40.4
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 7.8e-14 81.6 151 40.4
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 7.8e-14 81.6 218 35.3
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 7.8e-14 81.6 229 34.5
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-13 80.9 151 39.7
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.3e-13 80.9 151 39.7
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.3e-13 80.9 197 35.5
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 3.0e-13 79.7 137 40.9
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.0e-13 79.7 72 62.5
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 3.0e-13 79.7 218 35.8
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 5.0e-13 79.0 205 36.1
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 6.6e-13 78.6 146 43.2
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 8.6e-13 78.2 248 32.3
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.1e-12 77.8 181 40.3
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.5e-12 77.4 115 47.8
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 1.9e-12 77.0 223 35.9
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.9e-12 77.0 116 47.4
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-12 77.0 131 43.5
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.9e-12 77.0 131 43.5
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 2.5e-12 76.6 144 43.8
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 2.5e-12 76.6 111 45.0
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.3e-12 76.3 170 41.2
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 4.3e-12 75.9 153 41.8
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 4.3e-12 75.9 153 41.8
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 4.3e-12 75.9 153 41.8
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 5.6e-12 75.5 176 37.5
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 5.6e-12 75.5 176 36.9
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 9.5e-12 74.7 123 39.8
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-11 74.3 142 41.5
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.2e-11 74.3 142 41.5
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.1e-11 73.6 214 32.2
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.6e-11 72.8 153 41.2
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 4.7e-11 72.4 258 31.8
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 8.1e-11 71.6 145 40.7
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.4e-10 70.9 206 35.0
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.4e-10 70.9 111 43.2
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.8e-10 70.5 215 33.0
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.8e-10 70.5 48 70.8
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 2.3e-10 70.1 211 32.7
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 6.8e-10 68.6 222 31.1
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 8.9e-10 68.2 246 29.7
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.2e-09 67.8 219 34.2
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-09 67.0 219 35.2
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 3.4e-09 66.2 218 31.7
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 3.4e-09 66.2 207 31.9
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.4e-09 65.9 222 31.1
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 9.8e-09 64.7 213 31.9
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 9.8e-09 64.7 96 40.6
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.3e-08 64.3 246 29.3
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.7e-08 63.9 204 33.3
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.2e-08 63.5 52 59.6
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.9e-07 60.5 234 29.5
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 1.6e-06 57.4 55 54.5
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.1e-06 57.0 45 62.2
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 4.6e-06 55.8 145 36.6
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.6e-06 55.8 149 34.2
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 7.8e-06 55.1 54 55.6


User provided reference genes

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