Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 7.3e-283 976.5 464 100.0
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 2.7e-277 958.0 456 99.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 7.8e-277 956.4 464 97.4
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.3e-267 924.5 451 96.0
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 1.1e-265 919.5 456 94.3
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.3e-259 896.7 436 96.1
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.7e-255 885.6 459 90.2
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 4.9e-247 857.4 448 89.1
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 6.4e-247 857.1 448 87.3
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.4e-246 855.9 448 87.7
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.9e-246 855.5 448 87.7
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 7.1e-246 853.6 448 87.5
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.2e-245 852.8 448 88.6
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.6e-245 852.4 447 87.9
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 6.7e-244 847.0 448 86.6
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 3.3e-243 844.7 448 87.5
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.3e-243 844.3 448 87.9
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-242 842.4 448 86.4
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 4.8e-242 840.9 448 85.7
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.1e-241 838.2 448 85.5
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 4.0e-241 837.8 448 85.5
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.0e-241 836.6 448 85.5
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-240 835.9 448 85.5
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.0e-240 835.5 448 86.4
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.5e-240 834.3 448 84.8
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 4.5e-240 834.3 448 85.7
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 7.6e-240 833.6 448 85.7
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 1.0e-239 833.2 448 86.6
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.3e-239 832.8 448 85.3
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.7e-239 832.4 448 85.3
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.2e-238 828.2 447 85.9
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.1e-238 827.0 458 83.4
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.6e-237 825.9 448 85.7
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.6e-237 825.9 448 85.5
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.1e-237 825.5 448 85.5
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 7.9e-237 823.5 448 85.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 2.3e-236 822.0 448 85.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 3.0e-236 821.6 448 84.8
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 5.1e-236 820.8 448 84.8
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.1e-235 819.7 443 86.0
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.9e-235 818.9 448 83.7
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.9e-235 818.9 448 84.4
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.5e-235 818.5 447 86.1
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.6e-234 815.8 448 84.6
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.1e-234 815.5 447 84.8
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.1e-234 815.5 448 85.0
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.8e-234 815.1 448 84.2
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 3.7e-234 814.7 443 86.0
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 3.7e-234 814.7 443 86.0
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 8.2e-234 813.5 442 85.3
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 2.4e-233 812.0 448 84.2
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 3.1e-233 811.6 448 83.3
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 6.9e-233 810.4 448 83.3
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 9.0e-233 810.1 448 83.0
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 9.0e-233 810.1 448 84.4
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 9.0e-233 810.1 448 83.9
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.5e-232 809.3 448 85.0
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.0e-232 808.9 451 84.0
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 2.0e-232 808.9 448 84.6
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 2.6e-232 808.5 447 84.3
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 3.4e-232 808.1 448 83.0
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 3.4e-232 808.1 448 83.0
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 3.4e-232 808.1 442 84.8
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 4.5e-232 807.7 447 83.9
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.5e-232 807.7 448 85.0
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 5.8e-232 807.4 443 83.3
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 7.6e-232 807.0 448 83.0
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.0e-231 806.6 448 82.6
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.3e-231 806.2 448 82.1
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.3e-231 806.2 448 82.8
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.7e-231 805.8 442 84.2
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.2e-231 805.4 447 83.2
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.8e-231 804.7 448 83.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.1e-230 803.1 447 83.4
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 4.2e-230 801.2 448 83.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 5.5e-230 800.8 443 83.5
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.2e-229 799.7 442 83.5
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.2e-229 799.7 448 82.4
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.6e-229 799.3 427 85.5
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.6e-229 799.3 442 83.0
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.7e-229 798.5 448 82.6
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.7e-229 798.5 442 83.5
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.7e-229 798.5 447 83.7
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 6.1e-229 797.3 494 76.3
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.0e-228 796.6 448 83.0
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.3e-228 795.4 448 82.8
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 5.1e-228 794.3 448 81.5
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.1e-227 793.1 479 78.7
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.9e-227 792.3 447 81.9
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 4.3e-227 791.2 443 83.1
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 4.8e-226 787.7 448 81.2
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 6.3e-226 787.3 445 80.9
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 6.3e-226 787.3 447 79.4
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.4e-225 786.2 443 82.6
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.4e-225 786.2 447 82.6
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 4.1e-225 784.6 448 80.6
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 6.9e-225 783.9 470 78.7
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.0e-224 782.3 448 79.2
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 3.4e-224 781.6 448 82.8
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 2.9e-223 778.5 448 79.7
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 3.8e-223 778.1 448 79.7
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 3.8e-223 778.1 448 79.7
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 7.2e-222 773.9 442 81.9
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 2.1e-221 772.3 442 81.2
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 3.6e-221 771.5 442 82.1
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.0e-220 770.0 448 80.1
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 7.7e-216 753.8 420 83.8
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 3.9e-212 741.5 448 77.5
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.8e-210 735.3 446 75.6
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 2.1e-205 719.2 450 73.6
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 4.7e-205 718.0 448 74.1
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.0e-204 715.3 443 76.5
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 7.7e-200 700.7 388 82.0
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.3e-199 699.9 374 87.7
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 2.9e-199 698.7 452 74.1
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.8e-191 671.8 377 81.2
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.8e-188 661.0 459 69.9
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.1e-181 639.4 443 69.5
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.0e-176 622.9 452 68.6
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.6e-173 613.2 330 87.3
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.3e-164 582.8 434 67.1
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.9e-154 548.5 448 62.3
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 6.0e-152 541.6 294 86.4
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.7e-151 540.0 316 76.3
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 8.6e-151 537.7 295 85.4
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 7.3e-150 534.6 288 86.1
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 3.8e-138 495.7 441 59.0
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.4e-124 450.7 379 57.3
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.8e-123 445.3 295 70.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.2e-107 394.4 280 66.1
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.8e-87 327.4 194 74.7
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.7e-80 303.5 157 89.2
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.4e-71 274.6 153 78.4
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.4e-71 274.6 270 51.9
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 9.2e-68 261.9 153 73.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.6e-67 261.2 140 87.9
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.3e-66 257.3 145 78.6
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.3e-65 253.1 146 80.1
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.3e-63 247.3 156 71.2
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 6.8e-63 245.7 193 64.2
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.3e-61 241.5 147 72.8
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.4e-52 210.7 135 74.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 9.5e-49 198.7 138 68.1
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 8.9e-47 192.2 108 85.2
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 7.1e-44 182.6 116 72.4
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 7.1e-36 156.0 132 56.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.4e-22 110.5 55 89.1
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 6.4e-21 106.3 74 64.9
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.4e-20 104.4 78 60.3
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.7e-19 100.9 66 65.2
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.3e-18 98.6 66 62.1
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.3e-18 97.8 68 61.8
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.1e-17 95.5 83 53.0
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 5.6e-17 93.2 72 59.7
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.1e-15 89.0 67 59.7
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.4e-15 87.8 80 51.2
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 4.5e-14 83.6 49 69.4
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.2e-11 75.5 46 63.0
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.1e-11 74.7 41 70.7
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.7e-11 74.3 65 52.3
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 7.4e-09 66.2 162 30.9
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 7.4e-09 66.2 36 83.3


User provided reference genes

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