Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 3.2e-114 415.2 228 100.0
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 5.4e-106 387.9 228 93.9
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 7.8e-105 384.0 228 93.9
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 2.3e-88 329.3 230 80.9
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 8.4e-83 310.8 228 76.8
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 3.3e-79 298.9 228 78.1
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 1.1e-61 240.7 208 60.1
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 8.5e-59 231.1 210 64.3
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 3.7e-54 215.7 222 55.9
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.1e-53 214.2 201 58.2
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 2.2e-51 206.5 235 51.1
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 8.5e-51 204.5 208 54.3
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 1.1e-50 204.1 207 55.1
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 2.5e-50 203.0 233 51.5
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 1.2e-49 200.7 234 51.3
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 2.1e-49 199.9 208 52.9
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 2.7e-49 199.5 215 52.1
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 3.6e-49 199.1 215 53.5
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 6.1e-49 198.4 217 51.6
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 8.0e-49 198.0 221 53.4
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 1.0e-48 197.6 220 50.9
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 1.4e-48 197.2 209 51.2
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 1.8e-48 196.8 208 51.9
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 4.0e-48 195.7 208 54.8
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 1.2e-47 194.1 213 52.6
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 1.2e-47 194.1 212 51.4
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 2.0e-47 193.4 215 51.2
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 5.7e-47 191.8 211 52.6
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 9.8e-47 191.0 227 49.8
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 9.8e-47 191.0 215 51.2
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 1.3e-46 190.7 212 52.4
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 4.8e-46 188.7 209 51.7
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 6.3e-46 188.3 227 47.6
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 6.3e-46 188.3 207 48.8
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 1.1e-45 187.6 212 50.5
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 2.4e-45 186.4 212 50.5
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 2.4e-45 186.4 298 42.3
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 3.1e-45 186.0 223 50.7
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 4.1e-45 185.7 219 47.0
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 5.4e-45 185.3 209 51.7
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 9.1e-45 184.5 215 50.2
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 9.1e-45 184.5 207 49.3
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 1.2e-44 184.1 206 51.5
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 1.6e-44 183.7 228 48.2
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 1.6e-44 183.7 203 51.7
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 2.7e-44 183.0 208 51.0
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 3.5e-44 182.6 209 48.3
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 3.5e-44 182.6 209 48.3
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 4.5e-44 182.2 221 48.9
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 1.0e-43 181.0 208 50.5
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 1.3e-43 180.6 205 50.2
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 1.7e-43 180.3 206 52.4
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 2.2e-43 179.9 202 53.0
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 2.9e-43 179.5 140 65.7
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 3.8e-43 179.1 203 50.2
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 5.0e-43 178.7 223 50.2
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 6.5e-43 178.3 152 59.2
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.9e-42 176.8 204 52.9
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 4.2e-42 175.6 201 49.3
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 7.2e-42 174.9 220 47.3
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 9.4e-42 174.5 204 49.5
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.2e-41 174.1 203 52.2
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 1.2e-41 174.1 210 49.0
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 4.7e-41 172.2 204 51.5
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 8.0e-41 171.4 203 50.7
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.4e-40 170.6 205 51.7
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 1.8e-40 170.2 208 46.2
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 2.3e-40 169.9 191 50.3
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 3.0e-40 169.5 213 48.8
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 8.8e-40 167.9 191 49.2
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 2.0e-39 166.8 208 46.2
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 1.3e-38 164.1 209 45.5
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 2.2e-38 163.3 203 48.8
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 4.1e-37 159.1 159 52.8
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 5.4e-37 158.7 210 46.7
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 2.7e-36 156.4 207 45.4
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 3.5e-36 156.0 156 55.1
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 5.9e-36 155.2 201 44.8
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 1.9e-34 150.2 201 44.3
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 3.3e-34 149.4 113 66.4
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 4.2e-34 149.1 201 44.3
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 7.2e-34 148.3 198 44.4
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 7.2e-34 148.3 217 41.0
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 9.5e-34 147.9 243 39.1
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 9.5e-34 147.9 160 54.4
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 4.7e-33 145.6 206 45.6
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 6.1e-33 145.2 206 42.2
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 2.3e-32 143.3 200 45.5
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 2.9e-30 136.3 204 41.2
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 1.4e-29 134.0 161 48.4
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 1.4e-29 134.0 161 48.4
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 4.1e-29 132.5 208 42.3
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 5.9e-28 128.6 94 70.2
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 1.9e-26 123.6 137 49.6
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 8.3e-22 108.2 149 46.3
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 6.2e-17 92.0 122 45.9
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 2.3e-16 90.1 141 41.8
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 5.8e-15 85.5 163 36.8
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 7.5e-15 85.1 180 33.9
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 2.9e-14 83.2 71 63.4
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 7.1e-13 78.6 188 35.1
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 1.6e-12 77.4 100 45.0
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 2.1e-12 77.0 100 46.0
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 2.7e-12 76.6 208 33.7
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 9.9e-07 58.2 135 35.6


User provided reference genes

Program Settings