Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.4e-203 711.1 357 100.0
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 3.8e-199 698.0 357 98.3
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 5.1e-167 591.3 357 85.4
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 5.1e-127 458.4 362 69.1
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.2e-125 453.0 366 68.3
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.9e-121 439.9 353 69.1
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 4.9e-61 239.2 453 39.1
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 6.6e-58 228.8 453 38.6
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 8.1e-56 221.9 422 40.8
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.8e-55 220.7 380 41.8
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 2.3e-55 220.3 436 36.9
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.3e-55 220.3 452 38.3
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.3e-53 214.5 441 39.0
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.3e-53 214.5 442 36.0
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.7e-53 214.2 438 35.8
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.1e-52 211.5 433 38.3
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 3.2e-52 209.9 440 38.2
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 4.1e-52 209.5 433 35.8
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 4.1e-52 209.5 442 36.4
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 7.1e-52 208.8 445 37.1
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 7.1e-52 208.8 424 38.4
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 3.5e-51 206.5 439 35.8
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.7e-50 204.1 443 35.7
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.0e-50 203.4 460 36.7
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 3.0e-50 203.4 446 36.1
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 5.1e-50 202.6 439 34.4
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 9.6e-49 198.4 443 36.3
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 9.6e-49 198.4 445 34.4
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.6e-48 197.6 432 36.1
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.6e-48 197.6 432 35.4
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.6e-48 197.6 434 35.9
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.8e-48 196.8 439 35.5
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.8e-48 196.8 446 35.4
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 4.7e-48 196.1 433 36.0
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 4.7e-48 196.1 452 36.5
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 3.1e-47 193.4 458 34.1
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 4.0e-47 193.0 387 35.7
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 3.4e-46 189.9 447 34.7
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.4e-46 189.9 456 34.0
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 5.8e-46 189.1 461 35.4
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 9.9e-46 188.3 447 33.8
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 9.9e-46 188.3 411 35.3
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 1.7e-45 187.6 449 35.0
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 2.9e-45 186.8 494 33.0
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.4e-45 185.7 444 34.5
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.4e-44 184.5 432 34.3
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 5.4e-44 182.6 423 35.5
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 1.2e-43 181.4 480 33.1
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.2e-43 181.4 389 36.2
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.5e-43 179.9 433 33.9
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 3.0e-42 176.8 436 33.7
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.1e-42 176.0 456 33.6
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 6.6e-42 175.6 372 37.9
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.6e-42 175.6 454 32.6
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.7e-42 175.3 431 32.5
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-41 174.5 415 36.9
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.5e-41 174.5 452 32.7
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 2.5e-41 173.7 443 34.5
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 5.6e-41 172.6 414 37.0
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-40 171.4 412 35.9
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 2.1e-40 170.6 412 35.9
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.1e-40 170.6 394 35.5
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.4e-39 167.2 382 35.3
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 4.0e-39 166.4 475 31.4
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 6.9e-39 165.6 411 35.0
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 9.0e-39 165.2 446 32.3
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.5e-38 164.5 416 34.6
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 2.6e-38 163.7 426 32.6
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.2e-37 160.6 413 34.9
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 2.2e-37 160.6 428 32.9
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.9e-37 160.2 437 34.1
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 3.8e-37 159.8 447 32.4
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 4.9e-37 159.5 435 33.1
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 1.1e-36 158.3 415 33.0
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.4e-36 156.0 428 31.1
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 9.3e-36 155.2 434 32.5
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 2.1e-35 154.1 427 31.4
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 2.1e-35 154.1 419 32.0
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 7.9e-35 152.1 429 33.8
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.0e-34 151.8 446 31.2
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.3e-34 151.4 405 31.1
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.3e-34 151.4 434 30.4
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.8e-34 151.0 423 33.3
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 2.3e-34 150.6 384 32.0
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 5.1e-34 149.4 420 30.7
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 5.1e-34 149.4 414 31.4
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.1e-33 148.3 466 30.3
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.9e-33 147.5 434 32.5
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 3.3e-33 146.7 422 32.9
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 5.6e-33 146.0 445 31.2
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 5.6e-33 146.0 424 29.7
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 7.4e-33 145.6 458 31.4
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.6e-32 144.4 428 31.8
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.6e-32 144.4 428 30.1
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.1e-32 144.1 321 33.3
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.1e-32 144.1 358 33.8
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 2.1e-32 144.1 433 32.6
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 6.2e-32 142.5 448 32.6
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.2e-32 142.5 305 36.7
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.2e-32 142.5 434 31.8
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.1e-32 142.1 440 29.3
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 4.0e-31 139.8 391 33.8
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 5.3e-31 139.4 438 32.2
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 5.3e-31 139.4 441 31.7
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 9.0e-31 138.7 337 32.6
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 9.0e-31 138.7 425 31.8
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.0e-30 137.5 432 30.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.0e-30 137.5 430 30.9
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 2.6e-30 137.1 427 30.4
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.6e-30 137.1 448 29.5
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 5.8e-30 136.0 407 30.0
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 7.6e-30 135.6 414 31.4
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 7.6e-30 135.6 443 31.8
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.7e-29 134.4 432 29.2
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 1.7e-29 134.4 398 31.7
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 2.9e-29 133.7 420 31.9
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 8.4e-29 132.1 413 32.0
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 8.4e-29 132.1 442 30.5
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.9e-28 131.0 417 30.2
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 3.2e-28 130.2 308 33.1
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 3.2e-28 130.2 372 31.7
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 4.2e-28 129.8 442 30.5
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 7.1e-28 129.0 387 31.3
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 2.7e-27 127.1 448 29.7
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 6.0e-27 125.9 413 30.3
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 6.0e-27 125.9 425 28.9
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 6.0e-27 125.9 415 30.4
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.3e-26 124.8 316 34.2
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.3e-26 124.0 415 30.1
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 5.1e-26 122.9 310 32.9
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.1e-25 121.7 430 29.1
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.9e-25 120.9 419 28.6
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.6e-25 119.4 418 29.4
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 7.4e-25 119.0 412 28.2
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 1.3e-24 118.2 292 32.2
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 6.2e-24 115.9 417 28.3
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 6.2e-24 115.9 416 27.2
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.2e-24 115.9 412 28.4
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 6.2e-24 115.9 348 31.9
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.1e-23 115.2 416 29.1
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.4e-23 114.8 410 28.3
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.8e-23 114.4 429 28.0
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 6.9e-23 112.5 182 41.8
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 9.0e-23 112.1 339 31.0
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 2.0e-22 110.9 421 28.0
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 2.0e-22 110.9 337 30.0
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.0e-22 110.9 254 35.4
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.9e-21 107.1 413 27.4
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 4.9e-21 106.3 437 26.3
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.1e-20 105.1 438 29.2
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-19 101.7 344 29.1
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.6e-19 101.3 417 29.0
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.7e-19 100.5 435 25.7
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 3.5e-19 100.1 429 26.8
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 3.9e-18 96.7 402 28.1
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.9e-17 94.4 413 26.9
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 3.7e-16 90.1 439 23.5
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 4.8e-16 89.7 439 23.5
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.1e-15 87.0 392 28.1
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.9e-15 85.9 271 30.6
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 6.9e-15 85.9 422 28.0
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 9.0e-15 85.5 300 31.0
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 3.4e-14 83.6 350 26.0
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 4.5e-14 83.2 188 34.0
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.5e-13 79.3 423 24.6
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 7.2e-12 75.9 358 27.1
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.2e-11 75.1 392 25.8
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 2.1e-11 74.3 183 34.4
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 7.9e-11 72.4 535 23.6
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 4.8e-08 63.2 121 37.2
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.3e-08 62.8 144 36.8
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 1.8e-07 61.2 249 26.5
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 3.1e-07 60.5 148 36.5
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 4.1e-07 60.1 265 27.2
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 1.5e-06 58.2 67 47.8
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 2.6e-06 57.4 406 25.1
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 4.5e-06 56.6 156 32.1
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 5.9e-06 56.2 67 46.3
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 5.9e-06 56.2 67 46.3
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 7.7e-06 55.8 159 28.3


User provided reference genes

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