Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 7.2e-195 683.7 344 100.0
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 1.4e-177 626.3 456 74.8
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 1.9e-174 615.9 456 73.5
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 2.7e-173 612.1 391 82.1
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 3.1e-169 598.6 456 71.3
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 8.3e-167 590.5 456 70.8
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 6.6e-156 554.3 456 66.4
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 4.4e-152 541.6 457 65.2
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 5.8e-152 541.2 462 64.5
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 1.0e-148 530.4 456 64.5
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 1.3e-148 530.0 456 64.0
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 3.9e-148 528.5 410 70.7
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 1.3e-146 523.5 456 62.7
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 1.3e-146 523.5 456 62.5
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 2.8e-146 522.3 458 62.9
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 8.1e-146 520.8 459 63.4
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 8.1e-146 520.8 459 63.4
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 8.1e-146 520.8 460 63.5
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 1.4e-145 520.0 458 62.9
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 2.4e-145 519.2 456 62.9
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 3.1e-145 518.8 458 63.1
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 4.0e-145 518.5 458 62.0
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 5.3e-145 518.1 458 62.7
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 1.2e-144 516.9 458 62.2
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.2e-144 516.9 456 62.5
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 1.2e-144 516.9 457 62.4
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.5e-144 516.5 456 62.5
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 1.5e-144 516.5 456 62.5
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 2.0e-144 516.2 457 62.4
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 2.0e-144 516.2 456 62.1
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 2.6e-144 515.8 447 63.8
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 5.8e-144 514.6 459 62.5
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 5.8e-144 514.6 459 61.4
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 7.6e-144 514.2 456 62.7
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 9.9e-144 513.8 458 62.7
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 1.3e-143 513.5 459 62.1
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 1.7e-143 513.1 456 62.3
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 2.2e-143 512.7 456 61.8
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 2.9e-143 512.3 458 61.4
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 2.9e-143 512.3 456 62.5
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 3.8e-143 511.9 458 61.6
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 4.9e-143 511.5 458 62.4
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 4.9e-143 511.5 466 61.6
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 4.9e-143 511.5 458 62.2
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 8.4e-143 510.8 440 64.3
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 8.4e-143 510.8 439 63.6
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 1.1e-142 510.4 464 60.8
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.4e-142 510.0 456 62.1
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 1.9e-142 509.6 458 61.6
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 1.9e-142 509.6 456 61.0
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 2.4e-142 509.2 464 61.0
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 9.3e-142 507.3 460 61.1
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 9.3e-142 507.3 455 62.4
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 9.3e-142 507.3 459 61.4
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 1.2e-141 506.9 456 61.6
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 1.2e-141 506.9 456 60.5
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 1.2e-141 506.9 460 60.7
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 3.5e-141 505.4 458 61.8
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 3.5e-141 505.4 456 60.7
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 4.6e-141 505.0 462 60.4
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 4.6e-141 505.0 434 63.1
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 7.9e-141 504.2 456 60.3
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 7.9e-141 504.2 454 61.0
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.0e-140 503.8 431 64.3
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 1.0e-140 503.8 459 60.8
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 1.7e-140 503.1 454 60.1
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 1.7e-140 503.1 458 60.9
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 2.3e-140 502.7 459 60.6
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 5.1e-140 501.5 414 65.9
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 8.7e-140 500.7 457 60.0
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 1.9e-139 499.6 417 64.7
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 2.5e-139 499.2 456 60.3
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 3.3e-139 498.8 459 59.7
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 3.3e-139 498.8 449 61.9
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 4.3e-139 498.4 456 60.5
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 1.3e-138 496.9 414 64.5
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 2.8e-138 495.7 461 58.8
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 4.8e-138 495.0 434 62.7
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 4.8e-138 495.0 457 59.5
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 6.9e-137 491.1 457 59.1
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 6.9e-137 491.1 401 66.3
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 4.5e-136 488.4 457 58.9
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 7.6e-136 487.6 456 58.8
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 2.2e-135 486.1 447 60.9
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 2.2e-135 486.1 456 60.5
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 3.8e-135 485.3 456 58.6
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 1.1e-134 483.8 458 58.3
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 1.9e-134 483.0 458 58.1
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 9.3e-134 480.7 457 57.8
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 1.2e-133 480.3 457 58.6
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 2.7e-133 479.2 440 60.9
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 4.6e-133 478.4 417 61.2
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 4.6e-133 478.4 456 57.5
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 6.0e-133 478.0 462 58.0
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 2.3e-132 476.1 432 58.8
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 3.9e-132 475.3 460 57.4
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 5.1e-132 474.9 405 63.7
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 6.7e-132 474.6 457 57.3
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 8.7e-132 474.2 456 57.7
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 1.1e-131 473.8 456 57.9
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 1.5e-131 473.4 457 57.1
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 1.9e-131 473.0 457 57.1
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 5.6e-131 471.5 461 56.4
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 5.6e-131 471.5 458 57.6
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 2.1e-130 469.5 461 57.0
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 2.6e-128 462.6 436 57.8
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 1.3e-127 460.3 344 72.1
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 3.8e-127 458.8 438 58.0
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 2.5e-126 456.1 460 58.0
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 2.1e-125 453.0 344 69.2
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 2.7e-125 452.6 344 69.2
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 2.7e-125 452.6 344 69.2
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 1.9e-123 446.4 432 56.0
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 4.8e-122 441.8 410 57.6
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 2.6e-120 436.0 410 57.6
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 1.0e-119 434.1 429 54.3
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 1.3e-119 433.7 429 54.3
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 2.2e-119 433.0 461 54.9
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 4.2e-118 428.7 388 60.3
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 4.6e-117 425.2 345 69.3
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 1.4e-113 413.7 341 65.4
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 4.5e-112 408.7 382 58.4
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 2.7e-109 399.4 452 50.0
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 1.1e-107 394.0 372 57.0
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 2.2e-106 389.8 410 50.0
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 3.4e-104 382.5 357 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 6.5e-103 378.3 412 50.5
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 1.1e-94 350.9 330 54.8
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 6.7e-92 341.7 381 56.7
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 2.2e-90 336.7 404 45.8
THA.LOC104817643 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 5.0e-71 272.3 317 50.5
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 1.5e-70 270.8 305 55.4
MBI11_g19461_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 5.9e-64 248.8 278 50.4
Dinv26978 Davidia involucrata HOM05D004796 ORTHO05D016811 1.2e-59 234.6 161 78.9
ECA240G3001 Erigeron canadensis HOM05D004796 ORTHO05D006527 6.8e-52 208.8 213 56.8
THA.LOC104800063 Tarenaya hassleriana HOM05D004796 ORTHO05D016811 9.8e-51 204.9 113 91.2
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 3.2e-41 173.3 193 54.9
FAN04G2432 Fragaria x ananassa HOM05D004796 ORTHO05D016811 5.4e-41 172.6 99 88.9
RcHm_v2.0_Chr5g0045361 Rosa chinensis HOM05D004796 ORTHO05D006527 4.6e-40 169.5 105 76.2
FvH4_3g39110 Fragaria vesca HOM05D004796 ORTHO05D016811 2.6e-35 153.7 91 84.6
FvH4_4g11530 Fragaria vesca HOM05D004796 ORTHO05D016811 4.4e-35 152.9 86 90.7
FAN11G3064 Fragaria x ananassa HOM05D004796 ORTHO05D016811 5.4e-33 146.0 83 89.2
HPP92_019568 Vanilla planifolia HOM05D004796 ORTHO05D016811 5.6e-30 136.0 84 81.0
RcHm_v2.0_Chr2g0109351 Rosa chinensis HOM05D004796 ORTHO05D006527 3.2e-25 120.2 71 78.9
HanXRQChr14g0447641 Helianthus annuus HOM05D004796 ORTHO05D006527 5.4e-25 119.4 99 63.6
CBR_g8345 Chara braunii HOM05D004796 ORTHO05D034338 4.6e-24 116.3 204 34.8
Cfa010080 Carpinus fangiana HOM05D000911 ORTHO05D000890 2.4e-20 104.0 57 87.7
Cre07.g322000 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D034338 2.9e-18 97.1 217 34.1
Duzib160G0718 Durio zibethinus HOM05D004796 ORTHO05D006527 1.0e-15 88.6 73 54.8
MCO10G007 Micromonas commoda HOM05D004796 ORTHO05D034338 3.0e-15 87.0 184 33.2
BcaC01g02817 Brassica carinata HOM05D004796 ORTHO05D016811 8.1e-13 79.0 55 76.4
C03p59950 Brassica napus HOM05D004796 ORTHO05D016811 6.5e-10 69.3 42 78.6
BolC3t18259H Brassica oleracea HOM05D004796 ORTHO05D016811 6.5e-10 69.3 42 78.6
CAN.G212.10 Capsicum annuum HOM05D000007 ORTHO05D000039 1.0e-07 62.0 54 63.0
HPP92_019567 Vanilla planifolia HOM05D004796 ORTHO05D006527 1.1e-06 58.5 102 43.1


User provided reference genes

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