Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.8e-51 204.5 101 100.0
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 3.8e-51 204.5 101 100.0
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 3.7e-46 188.0 101 92.1
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 3.1e-37 158.3 103 72.8
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 5.3e-37 157.5 100 75.0
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.9e-37 157.1 110 78.2
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.2e-36 156.4 90 85.6
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 2.0e-36 155.6 103 78.6
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 7.6e-36 153.7 100 75.0
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.9e-35 151.8 100 75.0
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.1e-34 149.8 100 76.0
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 4.2e-34 147.9 100 74.0
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 2.7e-33 145.2 100 73.0
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 2.7e-33 145.2 101 72.3
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 6.1e-33 144.1 101 71.3
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.0e-32 143.3 103 70.9
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.3e-32 142.9 103 70.9
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.8e-32 142.5 100 71.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.9e-32 141.4 99 70.7
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.9e-32 141.4 99 70.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 5.1e-32 141.0 102 70.6
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.7e-32 140.6 100 67.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.7e-32 140.6 100 67.0
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.1e-31 139.8 102 69.6
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 4.3e-31 137.9 100 68.0
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.6e-30 136.0 100 70.0
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.2e-30 135.6 101 69.3
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 2.2e-30 135.6 101 67.3
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.8e-30 135.2 99 67.7
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.8e-30 135.2 100 69.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 4.8e-30 134.4 100 66.0
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 6.3e-30 134.0 101 67.3
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 8.2e-30 133.7 102 67.6
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.4e-29 132.9 101 67.3
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.8e-29 132.5 101 67.3
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.4e-29 132.1 102 65.7
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 3.1e-29 131.7 102 66.7
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 3.1e-29 131.7 101 67.3
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 4.1e-29 131.3 102 67.6
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 5.3e-29 131.0 103 65.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 6.9e-29 130.6 100 66.0
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 9.0e-29 130.2 102 64.7
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.2e-28 129.8 100 65.0
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.2e-28 129.8 102 63.7
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.5e-28 129.4 89 74.2
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.0e-28 129.0 100 64.0
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 2.0e-28 129.0 100 65.0
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.6e-28 128.6 100 65.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.6e-28 128.6 101 64.4
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.6e-28 128.6 99 67.7
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.6e-28 128.6 99 67.7
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 2.6e-28 128.6 101 61.4
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.4e-28 128.3 101 64.4
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 4.5e-28 127.9 100 63.0
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.9e-28 127.5 102 63.7
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 7.7e-28 127.1 103 65.0
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 7.7e-28 127.1 102 63.7
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.0e-27 126.7 102 65.7
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.0e-27 126.7 101 64.4
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.3e-27 126.3 100 64.0
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.3e-27 126.3 103 64.1
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.3e-27 126.3 102 61.8
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.3e-27 126.3 104 63.5
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.2e-27 125.6 101 63.4
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.9e-27 125.2 91 71.4
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.9e-27 125.2 100 61.0
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 3.8e-27 124.8 100 64.0
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 5.0e-27 124.4 96 65.6
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 5.0e-27 124.4 91 69.2
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 6.5e-27 124.0 101 64.4
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 6.5e-27 124.0 101 62.4
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 8.5e-27 123.6 100 59.0
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 8.5e-27 123.6 102 64.7
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.1e-26 123.2 106 64.2
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.1e-26 123.2 101 65.3
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.1e-26 123.2 102 60.8
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.4e-26 122.9 100 63.0
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.4e-26 122.9 100 63.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-26 122.9 92 67.4
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.4e-26 122.9 92 67.4
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.4e-26 122.9 102 61.8
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.9e-26 122.5 91 68.1
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.9e-26 122.5 98 63.3
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.5e-26 122.1 90 73.3
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.5e-26 122.1 99 63.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 3.2e-26 121.7 127 51.2
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 3.2e-26 121.7 100 58.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 3.2e-26 121.7 101 64.4
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 3.2e-26 121.7 104 64.4
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 4.2e-26 121.3 100 62.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 5.5e-26 120.9 102 62.7
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 7.2e-26 120.6 104 60.6
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.6e-25 119.4 100 65.0
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 2.1e-25 119.0 102 57.8
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.1e-25 119.0 99 63.6
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.1e-25 119.0 103 60.2
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.7e-25 118.6 105 63.8
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.7e-25 118.6 105 63.8
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 2.7e-25 118.6 100 62.0
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.6e-25 118.2 105 63.8
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 3.6e-25 118.2 101 58.4
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 4.6e-25 117.9 97 60.8
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 6.1e-25 117.5 101 56.4
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.1e-25 117.5 105 63.8
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.1e-25 117.5 105 63.8
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.0e-24 116.7 100 61.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 3.0e-24 115.2 103 59.2
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 3.0e-24 115.2 107 56.1
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 3.9e-24 114.8 102 59.8
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 5.1e-24 114.4 101 60.4
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 8.8e-24 113.6 74 70.3
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.5e-23 112.1 101 58.4
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 3.3e-23 111.7 90 67.8
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 5.7e-23 110.9 91 63.7
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 5.7e-23 110.9 101 58.4
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 9.7e-23 110.2 90 63.3
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.3e-22 109.8 90 63.3
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 8.2e-22 107.1 92 59.8
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.8e-21 105.9 100 59.0
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.1e-21 105.1 90 61.1
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.1e-21 105.1 92 63.0
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 4.1e-21 104.8 88 59.1
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 9.1e-21 103.6 89 58.4
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.2e-20 103.2 92 60.9
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 4.5e-20 101.3 89 58.4
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.7e-20 100.5 75 72.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.0e-19 100.1 89 57.3
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.0e-19 100.1 91 59.3
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 1.7e-19 99.4 91 58.2
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 7.2e-18 94.0 87 52.9
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.1e-17 92.4 50 78.0
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 5.1e-16 87.8 79 58.2
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.0e-15 85.9 75 60.0
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 9.7e-15 83.6 103 46.6
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 1.3e-14 83.2 78 61.5
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 8.2e-14 80.5 75 49.3
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 9.1e-13 77.0 80 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.6e-12 76.3 79 45.6
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 2.6e-12 75.5 76 57.9
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.7e-11 72.8 76 59.2
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.1e-10 70.1 77 54.5
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 2.5e-10 68.9 75 53.3
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 1.6e-09 66.2 101 40.6
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.8e-08 62.8 74 45.9
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.1e-07 60.1 40 65.0
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.0e-07 59.3 87 39.1
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 3.7e-06 55.1 94 37.2


User provided reference genes

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