Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 7.2e-179 630.6 341 100.0
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 5.7e-152 541.2 320 94.1
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.1e-137 493.8 332 86.1
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 2.0e-104 383.3 356 66.6
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.5e-102 375.2 298 72.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.3e-82 310.8 275 67.3
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.6e-77 292.4 339 58.7
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.3e-76 290.0 313 57.8
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.6e-69 267.3 348 54.0
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.4e-68 264.2 348 54.0
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.3e-68 263.5 341 54.8
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 3.1e-65 253.1 336 51.8
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 4.7e-61 239.2 349 50.7
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.4e-57 227.6 303 49.2
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 7.0e-57 225.3 352 44.9
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.5e-56 223.0 355 46.8
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.9e-55 219.9 314 43.6
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 8.5e-55 218.4 289 48.8
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.2e-54 216.1 347 46.1
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.2e-53 214.5 307 44.3
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.7e-53 213.4 350 42.9
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 8.0e-53 211.8 356 44.9
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.8e-52 210.7 346 42.8
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 7.5e-51 205.3 333 45.9
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 9.8e-51 204.9 358 45.5
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.7e-50 204.1 351 45.9
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.2e-50 203.8 326 45.7
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.8e-50 203.4 310 45.5
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 8.3e-50 201.8 359 43.7
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 8.3e-50 201.8 346 43.6
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.1e-49 201.4 356 42.7
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.7e-48 195.3 348 45.4
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 4.2e-46 189.5 307 47.9
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.3e-44 183.7 336 42.6
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 3.0e-44 183.3 345 38.8
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 3.0e-44 183.3 335 43.0
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 4.0e-44 183.0 358 41.1
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 6.8e-44 182.2 280 44.3
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 8.8e-44 181.8 279 44.1
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.5e-43 181.0 311 45.0
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.0e-43 180.6 348 41.7
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 5.7e-43 179.1 378 38.6
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 9.8e-43 178.3 345 38.3
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 2.2e-42 177.2 359 40.4
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 2.8e-42 176.8 345 37.7
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 4.9e-42 176.0 304 39.1
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 4.9e-42 176.0 304 39.1
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 4.9e-42 176.0 295 43.1
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.4e-41 174.5 293 41.6
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 2.4e-41 173.7 338 38.8
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 5.4e-41 172.6 280 43.9
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.2e-40 171.4 330 43.6
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.6e-40 171.0 369 40.1
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.0e-40 170.6 315 38.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.0e-40 170.6 294 39.5
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.5e-40 169.5 303 38.9
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.5e-40 169.5 317 43.2
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 7.8e-40 168.7 334 37.1
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 7.8e-40 168.7 334 37.1
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 7.8e-40 168.7 277 43.3
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.9e-39 166.8 364 39.6
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 3.3e-38 163.3 281 42.7
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 5.6e-38 162.5 313 41.9
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.6e-37 161.0 285 41.8
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 4.7e-37 159.5 319 39.2
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.0e-36 158.3 368 35.3
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.0e-36 158.3 297 43.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.4e-36 157.9 320 37.2
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.8e-36 157.5 352 38.4
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.5e-35 154.5 339 40.4
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.5e-35 154.5 339 40.4
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 5.7e-35 152.5 272 44.1
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 5.7e-35 152.5 258 45.3
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 7.5e-35 152.1 279 44.8
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 7.5e-35 152.1 266 46.6
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 7.5e-35 152.1 306 38.6
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 9.8e-35 151.8 378 34.4
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 4.9e-34 149.4 163 54.0
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 6.4e-34 149.1 292 41.1
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 8.3e-34 148.7 341 37.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.8e-33 147.5 277 44.8
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.4e-33 147.1 254 45.3
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.4e-33 147.1 418 35.6
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 7.0e-33 145.6 262 46.9
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 7.0e-33 145.6 279 44.1
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.0e-32 144.1 322 35.7
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 7.8e-32 142.1 350 36.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.0e-31 141.7 250 41.6
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.0e-31 141.7 229 43.2
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-31 141.4 306 39.2
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.3e-31 141.4 350 36.6
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.6e-31 139.0 218 42.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 8.6e-31 138.7 229 42.4
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.5e-30 137.9 388 31.7
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 3.3e-30 136.7 220 43.6
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 4.3e-30 136.3 231 42.9
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 2.8e-29 133.7 277 40.8
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 3.6e-29 133.3 274 43.1
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.7e-29 132.9 217 44.7
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 6.2e-29 132.5 320 36.6
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.4e-28 131.3 303 34.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.3e-28 130.6 194 50.5
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.0e-28 129.8 182 47.3
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 5.2e-28 129.4 140 52.9
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.4e-27 126.3 205 46.3
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 5.8e-27 125.9 371 35.0
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.5e-27 125.6 302 37.4
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.3e-26 124.8 299 34.1
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 3.7e-26 123.2 192 45.3
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 6.4e-26 122.5 177 53.1
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.1e-25 121.7 221 39.8
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.4e-25 121.3 425 28.7
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.4e-25 120.6 241 37.8
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 7.0e-25 119.0 424 29.0
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 3.5e-24 116.7 341 34.0
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.6e-24 116.3 236 37.7
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 3.0e-23 113.6 257 38.1
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 6.6e-23 112.5 194 46.4
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 6.6e-23 112.5 298 32.9
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 8.6e-23 112.1 185 47.6
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 8.6e-23 112.1 137 48.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.5e-22 111.3 162 46.3
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.5e-22 110.5 218 44.0
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.5e-22 110.5 298 34.2
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 5.6e-22 109.4 226 37.2
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.1e-21 107.5 185 46.5
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.1e-21 107.5 191 45.5
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.8e-21 107.1 325 35.1
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.8e-21 107.1 224 38.8
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.6e-21 106.7 177 49.2
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 3.6e-21 106.7 194 43.8
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 4.7e-21 106.3 184 45.7
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 6.2e-21 105.9 191 44.5
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.1e-20 105.1 259 37.1
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 3.1e-20 103.6 196 37.8
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 2.6e-19 100.5 180 46.7
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.2e-18 97.4 206 37.9
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.4e-17 94.0 323 27.2
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 3.2e-17 93.6 141 48.2
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.1e-17 93.2 218 36.7
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 9.2e-17 92.0 261 33.3
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.2e-16 91.7 278 33.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.1e-16 90.9 206 37.4
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.7e-16 90.5 237 38.0
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 2.7e-16 90.5 218 39.4
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 6.0e-16 89.4 146 41.8
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.6e-15 85.5 238 31.9
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.5e-14 84.7 138 42.8
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.9e-14 84.3 226 37.6
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 2.5e-14 84.0 89 55.1
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 7.3e-14 82.4 146 44.5
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 7.3e-14 82.4 202 37.1
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 6.2e-13 79.3 93 57.0
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 6.2e-13 79.3 312 31.4
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 4.0e-12 76.6 119 47.9
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 5.2e-12 76.3 188 38.8
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 7.6e-11 72.4 154 39.6
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.3e-10 71.6 155 34.8
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.9e-10 70.5 298 26.5
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.4e-09 68.2 142 40.1
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 3.2e-09 67.0 254 31.5
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 4.1e-09 66.6 220 33.2
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 4.1e-09 66.6 105 41.0
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 7.1e-09 65.9 254 28.7
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.1e-09 65.9 110 43.6
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.2e-08 65.1 151 32.5
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 2.1e-08 64.3 187 33.2
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 2.7e-08 63.9 187 32.6
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 3.0e-07 60.5 147 36.7
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.6e-07 59.3 86 50.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.6e-07 58.9 86 50.0
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.5e-06 58.2 147 36.1
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 2.5e-06 57.4 108 34.3
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 7.3e-06 55.8 158 36.1


User provided reference genes

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