Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.8e-151 538.9 337 100.0
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.8e-143 511.5 337 96.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 2.0e-136 489.6 341 93.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.4e-118 428.3 273 82.4
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 7.0e-118 427.9 293 82.3
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 5.6e-115 418.3 285 77.5
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.9e-103 379.4 285 68.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.2e-98 364.0 285 68.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 3.1e-97 359.4 288 70.8
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.4e-96 355.9 285 65.6
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.4e-96 355.5 285 65.3
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 6.4e-95 351.7 253 76.3
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 7.1e-94 348.2 298 64.1
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.8e-90 336.3 320 59.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.8e-90 336.3 320 59.1
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 5.2e-89 332.0 237 70.5
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 5.2e-89 332.0 320 59.1
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 7.6e-88 328.2 291 63.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.9e-87 326.2 288 62.5
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 7.8e-85 318.2 287 62.4
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.8e-81 307.0 287 58.9
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.2e-80 304.3 305 57.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 2.6e-80 303.1 290 59.3
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 7.6e-80 301.6 291 59.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 9.9e-80 301.2 285 58.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.9e-79 299.7 293 60.4
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.1e-78 297.7 294 57.8
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.2e-78 296.2 285 59.3
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.2e-78 295.8 288 58.3
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 4.2e-78 295.8 288 58.3
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.2e-77 294.3 301 58.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.6e-77 293.9 289 59.5
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.6e-77 292.4 287 57.8
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 3.0e-76 289.7 307 56.0
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 5.1e-76 288.9 297 57.2
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 6.6e-76 288.5 284 58.8
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.6e-76 288.5 287 57.1
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 7.3e-75 285.0 307 55.0
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.1e-74 283.5 280 60.7
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 3.6e-74 282.7 284 58.5
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.0e-72 276.9 293 57.3
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.6e-72 276.6 291 56.0
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 4.4e-72 275.8 294 54.8
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.9e-71 273.1 284 56.0
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.4e-70 270.0 285 52.6
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.7e-69 266.5 286 54.5
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.3e-68 263.5 291 55.0
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.3e-68 263.5 279 55.2
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.0e-68 263.1 283 54.1
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.9e-68 262.7 297 52.2
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.9e-68 262.7 281 56.2
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.1e-68 262.3 213 65.7
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.7e-68 261.5 283 53.4
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 8.7e-68 261.5 293 54.3
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.1e-67 261.2 286 53.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.9e-67 260.4 283 53.0
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.9e-67 260.4 283 53.0
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.6e-67 258.8 286 53.8
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 5.6e-67 258.8 260 56.5
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 9.6e-67 258.1 282 56.4
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.6e-66 257.3 283 53.0
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.8e-66 255.8 283 53.4
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.1e-65 254.6 298 52.3
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.1e-65 254.6 284 52.8
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.4e-65 254.2 288 53.8
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 4.0e-65 252.7 299 53.2
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.5e-64 250.8 291 54.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.0e-64 250.4 281 51.2
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 7.6e-64 248.4 284 53.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 7.6e-64 248.4 286 51.0
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 9.9e-64 248.1 291 52.6
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 9.9e-64 248.1 282 53.5
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.7e-63 247.3 283 50.5
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 2.2e-63 246.9 292 51.7
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.8e-63 246.1 280 51.8
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.4e-63 245.0 230 59.1
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 8.4e-63 245.0 285 52.6
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.1e-62 244.6 288 52.4
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.2e-62 243.0 285 51.2
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.2e-61 241.1 227 59.5
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.2e-61 241.1 227 59.5
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.2e-61 241.1 292 51.7
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.6e-61 240.7 311 48.6
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.7e-61 240.0 302 48.3
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 3.5e-61 239.6 287 50.9
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 6.0e-61 238.8 285 49.5
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-60 237.7 291 54.0
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.5e-59 234.2 288 49.3
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 2.5e-59 233.4 283 48.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 4.3e-59 232.6 305 49.2
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 3.7e-58 229.6 286 49.7
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 4.8e-58 229.2 289 49.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 6.2e-58 228.8 289 48.8
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 8.1e-58 228.4 285 49.8
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.4e-57 227.6 293 49.8
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.4e-57 227.6 293 49.8
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.4e-57 227.6 267 50.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.8e-57 227.3 338 43.8
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 2.4e-57 226.9 172 70.3
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.1e-57 226.5 285 49.5
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 9.0e-57 224.9 172 69.2
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.2e-56 224.6 286 49.3
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.0e-56 223.8 299 49.5
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.0e-56 223.8 289 48.8
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 4.5e-56 222.6 296 48.3
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 5.8e-56 222.2 251 54.6
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.3e-55 221.1 289 49.1
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 3.8e-55 219.5 292 51.4
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 6.5e-55 218.8 289 48.1
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 8.4e-55 218.4 295 47.5
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.1e-54 218.0 287 50.5
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.9e-54 217.2 226 56.6
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.5e-54 216.9 292 50.3
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.2e-54 216.1 297 49.2
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 5.5e-54 215.7 289 48.8
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 7.1e-54 215.3 292 51.0
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 9.3e-54 214.9 293 49.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.2e-53 214.5 291 49.5
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.1e-53 213.8 291 51.5
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.1e-53 213.8 296 49.0
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.7e-53 213.4 125 82.4
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.0e-52 209.9 291 49.5
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.1e-51 208.0 295 49.2
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.3e-50 204.5 292 49.3
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.8e-50 202.6 287 49.5
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 8.2e-50 201.8 295 46.1
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.8e-49 200.7 287 46.3
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.1e-49 199.5 162 66.7
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.2e-48 198.0 289 48.4
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.5e-48 197.6 265 52.1
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 5.9e-48 195.7 159 62.3
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.7e-47 194.1 295 45.1
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 7.9e-45 185.3 295 43.4
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.3e-44 184.5 284 44.7
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.3e-43 179.9 162 61.1
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.3e-43 179.5 243 47.3
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.3e-42 177.9 292 40.4
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.4e-41 174.5 184 53.3
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.2e-40 171.4 289 40.8
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.7e-37 160.2 289 42.9
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.7e-37 160.2 172 54.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.6e-37 159.5 291 38.1
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.7e-34 149.8 147 54.4
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 5.3e-33 146.0 223 45.3
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 6.9e-33 145.6 118 61.9
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.9e-31 140.2 132 59.1
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.0e-31 139.4 176 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.1e-30 138.3 281 36.7
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-30 138.3 135 54.1
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.4e-28 131.3 213 44.1
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.1e-25 119.8 76 75.0
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 3.8e-23 113.2 147 49.0
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.0e-23 112.8 147 47.6
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 5.5e-22 109.4 247 34.0
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-17 94.4 182 41.8
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 6.8e-12 75.9 116 41.4
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.2e-11 75.1 55 61.8
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 3.4e-11 73.6 153 41.2
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 5.9e-08 62.8 98 37.8
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-07 61.6 46 63.0
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.3e-07 61.6 98 42.9


User provided reference genes

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