Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 0.0e+00 1327.4 656 100.0
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 0.0e+00 1286.6 675 95.0
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 0.0e+00 1238.4 675 91.3
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 4.5e-312 1074.7 661 81.7
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 4.2e-300 1034.2 663 79.6
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.4e-292 1009.2 682 77.4
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 4.2e-244 848.2 591 72.9
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 1.5e-135 487.6 688 41.7
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.4e-133 481.1 697 41.3
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.8e-133 480.7 683 42.9
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 1.5e-124 451.1 692 41.5
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 5.7e-124 449.1 697 40.0
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 2.2e-123 447.2 686 40.2
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 1.1e-122 444.9 619 42.6
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.5e-121 439.5 607 42.8
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 3.7e-115 419.9 689 37.3
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.1e-114 416.8 689 38.3
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 7.0e-114 415.6 681 37.6
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 9.1e-114 415.2 683 38.9
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.7e-112 411.0 685 38.8
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 4.2e-111 406.4 671 38.6
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 4.2e-111 406.4 671 38.3
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 5.5e-111 406.0 648 38.6
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.2e-110 404.8 679 37.6
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.8e-110 403.7 685 38.2
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 6.1e-110 402.5 701 36.1
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 6.1e-110 402.5 677 36.6
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 1.4e-109 401.4 649 38.1
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.2e-108 398.3 680 37.2
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 1.3e-107 394.8 607 40.0
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.7e-107 394.4 677 38.0
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.9e-107 392.9 718 36.5
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.1e-106 391.7 672 38.2
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 1.1e-106 391.7 564 40.8
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 9.2e-106 388.7 676 35.8
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 9.2e-106 388.7 720 35.4
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 1.6e-105 387.9 679 37.3
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.0e-105 387.5 679 37.3
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 2.7e-105 387.1 684 37.7
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 4.5e-105 386.3 673 36.8
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.5e-105 386.3 564 41.1
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 1.5e-103 381.3 683 36.2
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.9e-103 380.9 688 36.8
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 2.5e-103 380.6 558 41.2
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 1.2e-100 371.7 689 36.9
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 2.6e-100 370.5 685 35.9
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 4.1e-98 363.2 686 34.5
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 5.4e-98 362.8 688 34.2
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.7e-96 357.8 691 34.2
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 3.0e-96 357.1 669 36.0
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 3.0e-96 357.1 679 33.9
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 3.9e-96 356.7 624 36.5
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 7.3e-95 352.4 679 34.3
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 4.7e-94 349.7 684 34.9
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.4e-93 348.2 657 34.4
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 1.8e-93 347.8 681 33.2
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 2.3e-93 347.4 656 35.8
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 4.4e-92 343.2 678 32.9
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 2.2e-91 340.9 532 38.9
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 2.2e-91 340.9 677 31.9
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 4.9e-91 339.7 684 34.9
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 1.1e-90 338.6 716 35.1
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.6e-89 334.7 580 37.6
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 3.5e-89 333.6 688 33.9
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 1.0e-88 332.0 668 35.2
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 2.8e-86 323.9 640 36.2
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 6.2e-86 322.8 665 33.5
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.1e-85 322.0 664 34.0
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.8e-85 321.2 656 35.7
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.2e-84 318.5 669 32.7
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 7.6e-84 315.8 658 33.4
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 9.9e-84 315.5 631 34.1
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 1.4e-82 311.6 696 32.5
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 1.9e-82 311.2 671 33.1
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 2.7e-81 307.4 652 32.5
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 2.7e-81 307.4 651 33.5
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 7.8e-81 305.8 649 33.1
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 5.1e-80 303.1 657 32.4
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 1.1e-79 302.0 682 33.3
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 2.8e-78 297.4 352 46.3
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 3.1e-77 293.9 645 32.9
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 3.4e-76 290.4 595 34.8
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 6.4e-75 286.2 732 32.0
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 5.6e-71 273.1 555 33.7
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 4.8e-70 270.0 713 29.3
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 1.4e-69 268.5 481 34.9
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 5.3e-69 266.5 675 31.9
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 9.0e-69 265.8 655 30.5
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 2.0e-68 264.6 675 31.7
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.3e-67 261.9 563 33.4
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 5.1e-64 250.0 445 34.6
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 3.3e-63 247.3 425 36.5
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.2e-59 234.6 414 37.4
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 4.2e-58 230.3 699 29.2
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 7.9e-57 226.1 430 36.3
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 2.0e-52 211.5 714 28.2
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 4.5e-52 210.3 322 36.6
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 5.8e-52 209.9 675 27.4
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 8.4e-51 206.1 389 33.2
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 2.9e-35 154.5 300 34.3
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.4e-26 125.6 367 29.7
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.0e-23 115.2 196 40.3
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 2.5e-18 98.2 295 26.1
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 3.6e-17 94.4 720 23.1
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 4.7e-17 94.0 233 27.9
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 6.1e-17 93.6 390 24.4
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.0e-16 92.8 95 49.5
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.8e-16 92.0 133 42.1
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.0e-16 91.3 187 32.1
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.6e-12 79.0 141 38.3
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 1.0e-08 66.2 510 21.6
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 1.8e-08 65.5 315 23.2
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 2.3e-08 65.1 46 60.9
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 5.2e-08 63.9 196 28.1
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 4.4e-07 60.8 118 33.1


User provided reference genes

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