Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.8e-236 822.4 473 100.0
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 3.5e-232 808.1 473 96.6
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 9.8e-227 790.0 473 95.1
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 8.4e-194 680.6 478 83.3
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 8.7e-191 670.6 476 81.9
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.1e-190 670.2 479 82.5
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 5.5e-177 624.8 479 77.2
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.2e-144 517.3 483 65.8
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.0e-142 510.0 482 62.9
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.8e-141 505.4 486 62.3
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 3.1e-140 502.7 479 63.9
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.7e-138 496.9 479 65.6
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 3.6e-136 489.2 470 62.1
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 6.1e-136 488.4 491 61.1
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.2e-134 484.2 483 61.5
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.7e-133 480.3 485 60.0
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 8.3e-133 478.0 481 60.1
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.4e-132 477.2 480 59.6
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 4.1e-132 475.7 478 64.2
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 5.6e-129 465.3 481 60.1
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 5.6e-129 465.3 486 60.7
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.1e-128 463.4 490 62.7
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.8e-128 463.0 461 62.0
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 8.0e-128 461.5 432 61.6
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.5e-126 457.2 495 57.8
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.5e-126 457.2 495 58.0
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 3.4e-126 456.1 471 62.0
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 4.4e-126 455.7 465 59.1
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.9e-125 453.0 493 61.3
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 3.7e-125 452.6 477 60.4
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 4.9e-125 452.2 473 61.1
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 6.4e-125 451.8 478 58.2
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 8.3e-125 451.4 489 60.5
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.4e-124 450.7 478 59.4
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.4e-124 450.7 483 59.6
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.4e-124 450.7 474 61.4
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 4.1e-124 449.1 474 61.2
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 9.2e-124 448.0 460 60.9
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-123 447.2 478 59.4
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.0e-123 445.3 478 59.2
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.0e-122 444.5 478 57.5
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 2.3e-122 443.4 470 60.6
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 2.8e-120 436.4 501 54.9
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.0e-120 434.9 486 57.8
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 6.8e-119 431.8 474 57.8
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 8.9e-119 431.4 482 54.8
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.2e-118 431.0 494 58.1
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 2.0e-118 430.3 487 55.0
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 9.8e-118 427.9 585 50.6
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.9e-117 426.4 484 58.5
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.4e-116 424.1 490 58.0
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.6e-115 420.6 482 57.7
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 4.6e-115 419.1 479 54.7
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 4.6e-115 419.1 476 55.3
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 7.8e-115 418.3 425 62.8
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.0e-114 417.9 482 57.1
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 2.3e-114 416.8 421 62.5
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.5e-113 413.3 480 59.4
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 3.3e-113 412.9 479 54.7
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 1.6e-112 410.6 492 54.5
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.4e-111 407.5 502 54.4
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 3.1e-111 406.4 481 52.4
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 3.1e-111 406.4 479 53.7
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 5.2e-111 405.6 447 57.5
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 6.8e-111 405.2 486 53.5
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 8.9e-111 404.8 480 55.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.2e-110 404.4 502 53.6
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.0e-110 403.7 512 51.6
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 4.4e-110 402.5 484 55.6
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 7.5e-110 401.7 461 57.0
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.9e-110 401.4 502 54.0
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 1.7e-109 400.6 466 55.6
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 3.7e-109 399.4 482 56.2
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 3.7e-109 399.4 459 54.2
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 1.9e-108 397.1 467 57.2
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.9e-108 397.1 479 55.1
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 7.1e-108 395.2 492 54.5
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 9.2e-108 394.8 499 51.1
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.6e-107 394.0 525 52.0
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.6e-107 394.0 483 55.9
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 6.0e-107 392.1 496 51.2
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.3e-106 390.2 484 54.8
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 3.0e-106 389.8 489 53.8
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.5e-105 387.5 491 53.4
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 4.3e-105 386.0 482 53.1
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.2e-104 384.4 497 52.5
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.1e-104 383.6 424 57.3
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 6.2e-104 382.1 473 56.9
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 8.1e-104 381.7 485 53.0
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 3.1e-103 379.8 425 56.2
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.2e-102 377.9 493 53.8
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.0e-102 377.1 328 69.8
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 4.4e-102 375.9 491 52.7
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.3e-101 374.4 471 51.8
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.3e-101 374.4 391 57.5
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.9e-100 370.5 477 54.3
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.6e-99 367.5 485 50.7
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.1e-99 367.1 355 63.4
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.1e-99 367.1 478 54.0
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 2.3e-98 363.6 509 50.7
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.2e-96 357.8 578 43.8
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.1e-96 357.1 483 52.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 3.4e-94 349.7 431 54.8
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-93 347.8 464 50.2
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.2e-91 341.3 468 50.9
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.0e-90 338.2 464 50.4
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 3.9e-90 336.3 482 49.0
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 4.3e-89 332.8 478 51.5
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.1e-88 330.5 548 42.0
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-87 327.8 474 51.1
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.4e-87 327.8 469 49.3
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.4e-87 327.0 244 75.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.1e-84 318.2 462 50.6
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 3.0e-82 310.1 335 58.8
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 7.4e-81 305.4 480 43.1
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 2.8e-80 303.5 428 50.9
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 3.7e-80 303.1 396 52.3
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 4.8e-80 302.8 478 49.0
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-79 301.6 449 46.3
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 4.9e-77 292.7 266 66.5
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 3.9e-74 283.1 474 44.9
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.3e-72 278.1 427 44.5
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.8e-72 276.9 447 45.4
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.4e-71 274.6 287 59.6
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.0e-62 244.2 474 40.5
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 4.5e-62 243.0 398 46.2
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 4.3e-57 226.5 268 58.2
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.0e-42 178.7 452 33.6
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 5.2e-42 176.4 450 32.0
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 5.2e-42 176.4 276 44.6
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.4e-34 151.8 420 32.4
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.0e-30 137.9 183 50.3
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 5.0e-29 133.3 441 33.6
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 7.2e-28 129.4 94 66.0
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.8e-24 117.5 79 65.8
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 4.1e-23 113.6 315 30.5
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 9.1e-23 112.5 175 46.3
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.0e-22 111.3 194 41.2
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 2.7e-22 110.9 173 39.3
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 4.5e-22 110.2 65 75.4
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 2.1e-19 101.3 187 40.1
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.2e-17 95.5 172 45.3
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 3.4e-17 94.0 181 38.7
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.7e-17 93.2 100 55.0
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.8e-15 88.2 87 52.9
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 3.1e-15 87.4 194 37.1
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 4.1e-15 87.0 262 31.7
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 5.9e-14 83.2 398 27.1
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 1.1e-12 79.0 146 37.7
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 3.3e-12 77.4 194 35.6
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 9.5e-12 75.9 270 32.2
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 3.6e-11 73.9 79 54.4
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 4.7e-11 73.6 319 28.5
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 3.1e-10 70.9 149 42.3
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 6.8e-10 69.7 308 27.9
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 3.7e-08 63.9 69 49.3
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 8.3e-08 62.8 113 38.9
CDE01G0591 Ceratophyllum demersum HOM05D058208 ORTHO05D130204 3.5e-06 57.4 65 43.1


User provided reference genes

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