Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 8.7e-30 132.9 63 100.0
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 1.5e-29 132.1 63 98.4
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 3.3e-29 131.0 63 98.4
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 3.3e-29 131.0 63 98.4
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.6e-28 128.6 63 96.8
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 2.1e-28 128.3 63 96.8
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 2.7e-23 111.3 63 84.1
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 1.3e-22 109.0 63 79.4
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 3.9e-22 107.5 63 81.0
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 5.1e-22 107.1 62 77.4
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 6.7e-22 106.7 63 79.4
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 1.5e-21 105.5 63 81.0
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 1.5e-21 105.5 63 81.0
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 1.5e-21 105.5 63 81.0
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 1.5e-21 105.5 63 81.0
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 3.3e-21 104.4 63 79.4
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 4.3e-21 104.0 63 79.4
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 7.4e-21 103.2 62 75.8
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 9.6e-21 102.8 63 76.2
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 2.1e-20 101.7 61 80.3
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 2.1e-20 101.7 63 76.2
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 2.1e-20 101.7 63 77.8
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 2.8e-20 101.3 63 77.8
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 3.7e-20 100.9 62 74.2
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 4.8e-20 100.5 63 76.2
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 4.8e-20 100.5 63 77.8
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 8.2e-20 99.8 63 76.2
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 8.2e-20 99.8 63 74.6
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 8.2e-20 99.8 63 76.2
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.1e-19 99.4 63 76.2
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 1.1e-19 99.4 63 73.0
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 1.1e-19 99.4 63 74.6
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 1.4e-19 99.0 63 73.0
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 1.4e-19 99.0 63 73.0
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 1.4e-19 99.0 61 77.0
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 1.8e-19 98.6 63 76.2
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 2.4e-19 98.2 63 69.8
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 3.1e-19 97.8 63 71.4
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 3.1e-19 97.8 61 72.1
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 3.1e-19 97.8 63 73.0
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 3.1e-19 97.8 63 73.0
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 4.1e-19 97.4 63 71.4
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 4.1e-19 97.4 62 71.0
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 4.1e-19 97.4 63 74.6
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 6.9e-19 96.7 63 73.0
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 6.9e-19 96.7 61 72.1
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 6.9e-19 96.7 63 71.4
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 9.0e-19 96.3 63 73.0
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 9.0e-19 96.3 61 73.8
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 1.2e-18 95.9 60 71.7
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 1.5e-18 95.5 63 69.8
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 1.5e-18 95.5 63 69.8
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 1.5e-18 95.5 61 72.1
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 1.5e-18 95.5 63 73.0
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 1.5e-18 95.5 61 72.1
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 2.0e-18 95.1 63 74.6
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 2.6e-18 94.7 63 73.0
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 3.4e-18 94.4 63 69.8
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 4.5e-18 94.0 61 75.4
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 5.9e-18 93.6 61 70.5
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 5.9e-18 93.6 63 68.3
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 5.9e-18 93.6 63 68.3
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 5.9e-18 93.6 63 68.3
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 1.0e-17 92.8 63 68.3
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 2.2e-17 91.7 63 68.3
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 2.2e-17 91.7 62 71.0
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 2.2e-17 91.7 63 66.7
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 2.2e-17 91.7 61 68.9
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 2.9e-17 91.3 61 68.9
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 2.9e-17 91.3 60 68.3
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 3.8e-17 90.9 63 69.8
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 5.0e-17 90.5 62 66.1
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 5.0e-17 90.5 62 66.1
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 5.0e-17 90.5 61 67.2
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 6.5e-17 90.1 63 68.3
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 1.1e-16 89.4 63 65.1
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 1.4e-16 89.0 61 67.2
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 1.9e-16 88.6 60 65.0
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 2.5e-16 88.2 63 65.1
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 3.2e-16 87.8 63 66.7
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 5.5e-16 87.0 60 66.7
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 5.5e-16 87.0 61 65.6
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 1.2e-15 85.9 63 66.7
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 3.6e-15 84.3 61 59.0
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 4.6e-15 84.0 63 57.1
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 1.0e-14 82.8 61 60.7
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 1.3e-14 82.4 63 57.1
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 1.3e-14 82.4 61 60.7
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 2.3e-14 81.6 63 57.1
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 3.0e-14 81.3 62 56.5
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 1.1e-13 79.3 63 55.6
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 1.5e-13 79.0 61 59.0
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.9e-13 78.6 61 59.0
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 1.9e-13 78.6 63 54.0
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 1.9e-13 78.6 63 54.0
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 1.9e-13 78.6 63 54.0
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 1.9e-13 78.6 63 54.0
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 1.9e-13 78.6 63 54.0
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 3.3e-13 77.8 63 55.6
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 4.3e-13 77.4 63 54.0
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 5.7e-13 77.0 63 54.0
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 1.3e-12 75.9 63 54.0
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 1.6e-12 75.5 63 50.8
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 2.2e-12 75.1 61 52.5
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 4.8e-12 73.9 49 69.4
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 6.3e-12 73.6 63 49.2
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 4.5e-10 67.4 61 52.5
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 1.7e-09 65.5 61 50.8
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 1.1e-08 62.8 61 47.5
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 5.1e-06 53.9 61 37.7


User provided reference genes

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