Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 9.0e-96 353.6 180 100.0
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 1.6e-76 289.7 142 99.3
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 3.5e-76 288.5 142 98.6
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.8e-73 278.9 142 93.7
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.2e-70 269.2 142 90.8
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 2.9e-70 268.9 142 90.1
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 1.6e-68 263.1 142 87.3
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 9.7e-66 253.8 143 83.9
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 4.8e-65 251.5 142 81.0
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.4e-64 250.0 170 74.7
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 6.9e-64 247.7 142 80.3
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 3.4e-63 245.4 142 78.9
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 7.7e-63 244.2 142 79.6
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.3e-62 243.4 142 78.2
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 6.5e-62 241.1 142 77.5
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 6.5e-62 241.1 142 78.2
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.1e-61 240.4 142 77.5
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.1e-61 240.4 142 77.5
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.4e-61 240.0 142 77.5
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.4e-61 240.0 142 77.5
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 4.2e-61 238.4 142 78.2
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 5.5e-61 238.0 142 76.8
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 9.4e-61 237.3 140 77.9
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 9.4e-61 237.3 159 71.1
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 9.4e-61 237.3 142 77.5
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 9.4e-61 237.3 141 77.3
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.6e-60 236.5 142 76.8
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.6e-60 236.5 142 76.8
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.4e-59 233.4 142 76.1
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.8e-59 233.0 141 75.9
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.8e-59 233.0 142 77.5
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 2.3e-59 232.6 143 75.5
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 2.3e-59 232.6 142 76.1
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 5.1e-59 231.5 143 75.5
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.1e-58 230.3 143 74.8
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.1e-58 230.3 142 74.6
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.3e-58 228.8 142 73.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.3e-58 228.8 136 77.2
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.3e-58 228.8 142 75.4
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 4.4e-58 228.4 142 73.2
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 7.4e-58 227.6 142 73.2
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 9.7e-58 227.3 142 72.5
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.2e-57 226.1 142 71.8
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 2.8e-57 225.7 141 74.5
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 6.3e-57 224.6 141 73.8
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 8.2e-57 224.2 142 70.4
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 8.2e-57 224.2 142 71.8
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.1e-56 223.8 142 71.8
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.1e-56 223.8 142 71.8
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 1.1e-56 223.8 141 72.3
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.1e-56 223.8 142 73.2
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.1e-56 223.8 142 73.2
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.8e-56 223.0 142 71.1
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.4e-56 222.6 142 71.8
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 2.4e-56 222.6 142 73.2
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 3.1e-56 222.2 142 72.5
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.1e-56 221.9 142 69.0
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 4.1e-56 221.9 142 71.1
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 4.1e-56 221.9 142 73.2
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.3e-56 221.5 142 72.5
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 9.1e-56 220.7 141 72.3
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 9.1e-56 220.7 142 72.5
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 9.1e-56 220.7 142 71.8
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.5e-55 219.9 143 70.6
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 2.0e-55 219.5 139 72.7
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 2.6e-55 219.2 142 70.4
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 2.6e-55 219.2 142 70.4
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 2.6e-55 219.2 142 70.4
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 2.6e-55 219.2 142 70.4
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.6e-55 219.2 142 71.1
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.4e-55 218.8 141 71.6
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 4.5e-55 218.4 142 70.4
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 4.5e-55 218.4 142 70.4
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 4.5e-55 218.4 142 70.4
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 4.5e-55 218.4 142 71.1
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 4.5e-55 218.4 142 71.1
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 4.5e-55 218.4 142 71.1
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 4.5e-55 218.4 142 71.1
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 5.9e-55 218.0 142 70.4
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.9e-55 218.0 142 71.1
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 5.9e-55 218.0 141 70.9
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 7.7e-55 217.6 143 73.4
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.0e-54 217.2 142 70.4
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 1.3e-54 216.9 142 69.7
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.3e-54 216.9 142 73.2
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 2.2e-54 216.1 142 70.4
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 2.2e-54 216.1 142 69.7
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 2.2e-54 216.1 142 70.4
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.8e-54 215.3 142 73.2
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 5.0e-54 214.9 161 64.0
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 6.5e-54 214.5 142 69.0
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.1e-53 213.8 140 69.3
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 1.1e-53 213.8 145 71.7
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.1e-53 213.8 143 69.2
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.9e-53 213.0 141 73.8
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.5e-53 212.6 140 69.3
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 3.2e-53 212.2 139 71.9
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.2e-53 212.2 142 70.4
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.2e-53 212.2 139 70.5
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 4.2e-53 211.8 138 73.2
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 4.2e-53 211.8 140 69.3
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 5.5e-53 211.5 140 70.0
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 7.2e-53 211.1 193 57.0
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 7.2e-53 211.1 193 57.0
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 9.4e-53 210.7 142 67.6
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.2e-52 210.3 142 69.0
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 1.6e-52 209.9 145 69.7
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 2.1e-52 209.5 142 71.1
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.7e-52 209.1 141 69.5
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.7e-52 209.1 141 69.5
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 2.7e-52 209.1 140 70.7
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.6e-52 208.8 141 69.5
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 6.1e-52 208.0 146 68.5
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 7.9e-52 207.6 143 70.6
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 1.0e-51 207.2 140 67.1
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 1.4e-51 206.8 138 71.0
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.4e-51 206.8 135 70.4
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.4e-51 206.8 141 69.5
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.8e-51 206.5 132 74.2
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 2.3e-51 206.1 132 73.5
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 3.0e-51 205.7 141 68.8
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 5.2e-51 204.9 136 68.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 5.2e-51 204.9 145 68.3
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.2e-51 204.9 142 67.6
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 6.7e-51 204.5 142 67.6
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 8.8e-51 204.1 146 67.8
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.5e-50 203.4 191 52.9
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.5e-50 203.4 157 65.0
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.0e-50 203.0 141 68.8
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.7e-50 201.4 175 61.7
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.7e-49 199.9 138 65.9
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.2e-49 199.5 140 67.1
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 5.3e-48 194.9 142 66.2
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.2e-47 193.7 135 64.4
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.5e-47 192.2 142 66.2
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.2e-46 189.5 142 64.8
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.2e-46 189.5 142 64.1
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 5.0e-46 188.3 118 73.7
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 5.0e-46 188.3 139 65.5
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 3.2e-45 185.7 144 63.9
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 3.2e-45 185.7 143 65.7
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.2e-41 172.9 108 75.9
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 4.5e-39 165.2 287 35.9
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 7.7e-39 164.5 140 56.4
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.7e-38 163.3 141 56.0
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.9e-38 162.5 143 56.6
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 5.0e-38 161.8 140 55.0
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.1e-37 160.6 135 58.5
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 3.6e-36 155.6 126 58.7
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 5.2e-35 151.8 129 55.0
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.8e-35 151.4 129 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 8.8e-35 151.0 140 50.0
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 3.4e-34 149.1 142 50.0
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.2e-31 140.6 125 53.6
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 8.0e-28 127.9 67 89.6
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.2e-26 124.0 130 46.9
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.4e-26 122.5 80 71.2
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 3.4e-26 122.5 80 71.2
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 5.7e-26 121.7 73 72.6
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.6e-20 103.6 103 51.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.6e-20 103.6 103 51.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.6e-20 103.6 103 51.5
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 8.0e-20 101.3 87 58.6
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 2.3e-19 99.8 67 67.2
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 1.2e-18 97.4 113 48.7
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 2.6e-18 96.3 117 41.0
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.4e-18 95.9 77 62.3
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 4.4e-18 95.5 59 72.9
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 4.4e-18 95.5 59 72.9
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 4.9e-17 92.0 121 41.3
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 6.4e-17 91.7 65 64.6
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 3.2e-16 89.4 112 48.2
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.3e-13 79.3 115 45.2
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 9.5e-13 77.8 68 54.4
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 1.1e-11 74.3 68 52.9
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 2.0e-10 70.1 40 72.5
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 4.9e-09 65.5 43 69.8
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.2e-08 62.8 38 76.3
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 9.2e-08 61.2 42 66.7
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 9.2e-08 61.2 107 34.6
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.3e-06 57.4 37 67.6
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 3.9e-06 55.8 34 64.7
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.0e-06 55.5 36 66.7
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 8.6e-06 54.7 34 61.8


User provided reference genes

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