Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 4.7e-175 617.8 333 100.0
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 6.8e-158 560.8 334 92.8
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 1.5e-133 479.9 333 82.6
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 3.3e-128 462.2 371 72.2
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 2.5e-120 436.0 335 74.9
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 4.5e-117 425.2 335 72.5
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 7.9e-106 387.9 333 68.5
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 1.6e-82 310.5 298 65.4
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 7.5e-80 301.6 297 63.6
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 5.4e-78 295.4 318 59.4
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 9.1e-78 294.7 297 62.6
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 9.2e-62 241.5 341 48.7
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 2.3e-60 236.9 194 64.9
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 1.5e-59 234.2 154 74.0
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 1.5e-56 224.2 372 44.1
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 4.4e-56 222.6 335 46.9
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 1.3e-55 221.1 186 62.4
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 4.9e-55 219.2 144 75.7
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 6.4e-55 218.8 218 56.4
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 1.1e-54 218.0 235 54.5
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 1.4e-54 217.6 183 60.1
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 1.9e-54 217.2 183 59.6
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 1.9e-54 217.2 145 75.2
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 3.2e-54 216.5 348 42.0
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 3.2e-54 216.5 215 55.3
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 9.2e-54 214.9 354 42.7
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 1.2e-53 214.5 330 44.8
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 2.7e-53 213.4 233 53.2
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 2.7e-53 213.4 184 59.8
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 3.5e-53 213.0 348 44.5
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 3.5e-53 213.0 312 46.2
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 3.5e-53 213.0 330 43.3
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 4.6e-53 212.6 237 54.0
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 6.0e-53 212.2 305 47.9
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 6.0e-53 212.2 231 52.4
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 7.8e-53 211.8 152 71.7
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 1.0e-52 211.5 356 42.4
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.7e-52 210.7 132 78.8
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 1.7e-52 210.7 332 46.4
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 3.0e-52 209.9 341 44.6
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 3.0e-52 209.9 291 48.5
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 3.9e-52 209.5 254 52.0
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 3.9e-52 209.5 149 67.8
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 6.6e-52 208.8 150 69.3
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 6.6e-52 208.8 150 69.3
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 6.6e-52 208.8 150 69.3
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 6.6e-52 208.8 150 69.3
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 8.6e-52 208.4 151 68.9
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 8.6e-52 208.4 159 66.0
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 1.1e-51 208.0 155 70.3
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 1.5e-51 207.6 254 50.8
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 1.5e-51 207.6 214 53.7
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.5e-51 207.6 324 43.8
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 4.3e-51 206.1 339 41.3
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 4.3e-51 206.1 316 44.3
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 7.3e-51 205.3 331 44.4
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 9.5e-51 204.9 337 42.1
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 1.6e-50 204.1 254 51.2
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 3.6e-50 203.0 134 74.6
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 6.2e-50 202.2 351 41.6
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 6.2e-50 202.2 279 47.7
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 1.8e-49 200.7 232 51.7
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 4.0e-49 199.5 362 41.7
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 5.2e-49 199.1 353 43.9
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 5.2e-49 199.1 140 71.4
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.8e-49 198.7 306 44.8
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 6.8e-49 198.7 306 44.8
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 8.9e-49 198.4 152 63.8
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.5e-48 197.6 254 49.6
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 2.0e-48 197.2 181 60.2
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 2.6e-48 196.8 374 41.4
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 3.4e-48 196.4 134 68.7
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 3.4e-48 196.4 310 44.2
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 4.4e-48 196.1 321 43.9
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 5.8e-48 195.7 324 41.4
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 7.6e-48 195.3 374 41.2
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 1.3e-47 194.5 294 45.6
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 2.2e-47 193.7 318 43.7
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.7e-47 193.0 341 41.1
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 8.3e-47 191.8 329 41.6
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 1.1e-46 191.4 308 43.2
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.1e-46 191.4 330 41.5
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 1.1e-46 191.4 330 42.7
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-46 190.7 157 60.5
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 3.2e-46 189.9 309 42.4
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 5.4e-46 189.1 237 50.2
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 7.1e-46 188.7 213 51.6
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 2.1e-45 187.2 217 53.0
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 4.6e-45 186.0 289 45.3
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 4.6e-45 186.0 327 41.9
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 6.0e-45 185.7 313 40.9
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.0e-44 184.9 302 44.0
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 1.7e-44 184.1 225 51.1
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 2.3e-44 183.7 332 40.1
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.6e-44 181.8 157 58.6
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.6e-44 181.8 157 58.6
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 1.5e-43 181.0 343 42.3
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.9e-43 180.6 306 40.2
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 3.3e-43 179.9 157 58.0
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 3.3e-43 179.9 174 57.5
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 3.3e-43 179.9 222 49.5
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 7.3e-43 178.7 286 43.0
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 9.6e-43 178.3 151 61.6
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 2.1e-42 177.2 334 41.9
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 3.6e-42 176.4 327 41.9
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 8.1e-42 175.3 303 40.6
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.1e-41 174.9 313 40.6
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 2.4e-41 173.7 348 40.2
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 8.9e-41 171.8 367 40.9
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 8.9e-41 171.8 232 46.1
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.5e-40 171.0 327 40.7
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.0e-40 170.6 134 64.2
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 2.0e-40 170.6 159 57.2
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.6e-40 170.2 387 38.0
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 4.4e-40 169.5 178 55.6
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 9.9e-40 168.3 155 57.4
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 9.9e-40 168.3 352 38.4
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 4.9e-39 166.0 307 41.0
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 1.1e-38 164.9 132 62.9
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 7.1e-38 162.2 135 58.5
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 9.3e-38 161.8 136 64.0
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 6.0e-37 159.1 148 58.8
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 6.0e-37 159.1 373 37.0
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 1.7e-36 157.5 153 52.3
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 8.7e-36 155.2 138 57.2
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 1.4e-33 147.9 132 60.6
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 1.5e-32 144.4 144 56.9
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.0e-32 144.1 102 73.5
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 2.4e-30 137.1 132 50.8
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.1e-29 134.0 165 48.5
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 2.5e-27 127.1 248 39.9
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.4e-25 121.3 292 33.2
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.4e-25 121.3 95 61.1
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 2.2e-23 114.0 89 64.0
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 3.5e-21 106.7 117 50.4
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 7.9e-21 105.5 136 44.1
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 7.4e-19 99.0 133 39.8
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 1.2e-16 91.7 100 56.0
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 5.8e-16 89.4 204 32.4
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 7.1e-14 82.4 86 52.3
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 3.3e-11 73.6 137 34.3
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 4.3e-11 73.2 141 32.6
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 5.3e-09 66.2 200 34.0
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 5.8e-08 62.8 57 54.4
PRCOL_00005361 Prasinoderma coloniale HOM05D005159 ORTHO05D006237 6.5e-07 59.3 141 30.5


User provided reference genes

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