Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g089390.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 8.4e-79 297.0 151 100.0
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 8.4e-79 297.0 151 100.0
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 1.4e-73 279.6 149 95.3
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.4e-70 269.6 150 92.7
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.4e-70 268.9 150 92.0
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 2.0e-64 249.2 150 86.7
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 9.9e-64 246.9 151 87.4
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 2.2e-63 245.7 151 82.8
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 4.9e-63 244.6 153 82.4
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 1.9e-62 242.7 151 85.4
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 3.2e-62 241.9 153 82.4
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 3.2e-62 241.9 153 81.7
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 3.2e-62 241.9 153 81.7
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 2.1e-61 239.2 153 80.4
Nitab4.5_0000154g0090 Nicotiana tabacum HOM05D003495 ORTHO05D004159 3.5e-61 238.4 151 84.1
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 3.5e-61 238.4 152 80.9
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 4.6e-61 238.0 151 82.8
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 1.0e-60 236.9 153 79.1
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.0e-60 236.9 151 83.4
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 1.8e-60 236.1 152 78.9
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 2.3e-60 235.7 152 78.3
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 6.7e-60 234.2 150 82.0
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 6.7e-60 234.2 153 80.4
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 8.7e-60 233.8 153 81.0
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 8.7e-60 233.8 153 79.1
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 1.1e-59 233.4 153 80.4
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 2.5e-59 232.3 153 81.0
RcHm_v2.0_Chr2g0117951 Rosa chinensis HOM05D003495 ORTHO05D004159 2.5e-59 232.3 153 78.4
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 2.5e-59 232.3 150 82.0
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 3.3e-59 231.9 153 80.4
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 5.6e-59 231.1 152 77.0
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 5.6e-59 231.1 155 78.7
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 7.4e-59 230.7 153 79.1
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 1.3e-58 229.9 152 78.9
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 1.6e-58 229.6 153 79.1
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 2.1e-58 229.2 152 76.3
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 2.1e-58 229.2 153 76.5
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 2.8e-58 228.8 153 77.1
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 2.8e-58 228.8 153 79.1
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 2.8e-58 228.8 153 79.1
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 2.8e-58 228.8 153 79.1
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 3.6e-58 228.4 153 78.4
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 4.8e-58 228.0 153 80.4
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 6.2e-58 227.6 146 78.8
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 8.1e-58 227.3 152 75.7
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 8.1e-58 227.3 153 78.4
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 8.1e-58 227.3 146 78.8
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 1.4e-57 226.5 151 80.1
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 1.8e-57 226.1 153 77.8
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 2.4e-57 225.7 151 80.8
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 2.4e-57 225.7 146 78.1
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.4e-57 225.7 146 78.1
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.4e-57 225.7 146 78.1
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 5.3e-57 224.6 153 77.1
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 5.3e-57 224.6 146 77.4
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 4.5e-56 221.5 152 76.3
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 5.8e-56 221.1 153 77.8
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 9.9e-56 220.3 152 75.7
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 1.3e-55 219.9 151 74.2
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 1.3e-55 219.9 154 76.0
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 2.2e-55 219.2 155 76.1
Lsat_1_v5_gn_4_173921 Lactuca sativa HOM05D003495 ORTHO05D004159 8.4e-55 217.2 156 74.4
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 8.4e-55 217.2 153 73.9
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 3.2e-54 215.3 152 75.0
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 3.2e-54 215.3 155 72.3
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 3.2e-54 215.3 152 77.6
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 9.3e-54 213.8 151 72.8
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 2.1e-53 212.6 152 75.0
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 2.7e-53 212.2 153 71.9
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 3.5e-53 211.8 155 71.0
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 4.6e-53 211.5 152 72.4
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 4.6e-53 211.5 152 71.7
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 1.3e-52 209.9 152 73.0
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 6.7e-52 207.6 155 71.6
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 6.7e-52 207.6 155 71.0
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 8.7e-52 207.2 155 70.3
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 4.3e-51 204.9 152 73.0
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 7.4e-51 204.1 153 71.2
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 6.2e-50 201.1 152 71.7
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 6.2e-50 201.1 152 70.4
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 1.1e-49 200.3 154 69.5
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 1.1e-49 200.3 154 74.0
Ca_20757_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 2.4e-49 199.1 153 69.3
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 3.1e-49 198.7 151 70.9
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 3.1e-49 198.7 151 70.9
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 3.1e-49 198.7 151 70.9
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 3.1e-49 198.7 154 68.8
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 6.9e-49 197.6 151 70.9
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 6.9e-49 197.6 151 70.9
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 1.2e-48 196.8 151 70.2
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 2.6e-48 195.7 154 68.8
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 2.6e-48 195.7 153 68.0
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 3.4e-48 195.3 157 69.4
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 5.8e-48 194.5 154 68.8
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 5.8e-48 194.5 154 68.8
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 7.6e-48 194.1 154 68.8
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 1.3e-47 193.4 154 68.2
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 2.2e-47 192.6 146 69.9
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 2.2e-47 192.6 151 70.2
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 2.9e-47 192.2 151 68.9
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 6.5e-47 191.0 162 66.7
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.1e-46 190.3 151 68.9
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 1.4e-46 189.9 154 68.8
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 1.9e-46 189.5 154 71.4
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 4.2e-46 188.3 151 68.2
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 3.9e-44 181.8 177 62.7
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 2.1e-42 176.0 150 64.7
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 2.1e-42 176.0 150 64.7
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 8.2e-42 174.1 150 63.3
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 1.4e-41 173.3 153 66.7
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 1.4e-41 173.3 151 64.9
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 6.9e-41 171.0 156 62.2
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 9.0e-41 170.6 152 64.5
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 1.5e-40 169.9 150 63.3
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 1.9e-38 162.9 156 59.6
Psat6g133600 Pisum sativum HOM05D003495 ORTHO05D004159 2.5e-38 162.5 128 70.3
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 9.3e-38 160.6 159 57.9
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 1.2e-37 160.2 98 84.7
CAN.G497.63 Capsicum annuum HOM05D003495 ORTHO05D004159 6.1e-37 157.9 108 80.6
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 1.0e-36 157.1 149 59.1
SEGI_11817 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.0e-36 157.1 152 60.5
Hund20735 Selenicereus undatus HOM05D003495 ORTHO05D004159 3.9e-36 155.2 151 57.0
Os02g0830900 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 5.1e-36 154.8 154 57.1
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 5.1e-36 154.8 106 75.5
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 1.4e-33 146.7 105 74.3
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 1.8e-33 146.4 148 56.8
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 4.2e-30 135.2 164 50.6
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 7.2e-30 134.4 170 50.6
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 1.0e-28 130.6 158 52.5
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 2.3e-28 129.4 150 52.0
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 2.0e-27 126.3 148 49.3
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 2.2e-23 112.8 166 45.2
CAN.G497.68 Capsicum annuum HOM05D003495 ORTHO05D015025 1.1e-22 110.5 89 68.5
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.6e-21 106.7 166 44.0
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 6.1e-21 104.8 166 43.4
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 7.9e-21 104.4 150 46.0
BcaB08g36895 Brassica carinata HOM05D003495 ORTHO05D004159 1.2e-08 63.9 37 83.8
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 3.8e-07 58.9 167 31.1


User provided reference genes

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