Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 3.6e-62 241.5 132 100.0
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 8.4e-51 203.8 114 94.7
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 1.1e-34 150.2 111 78.4
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 7.9e-33 144.1 106 75.5
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.1e-29 133.7 130 67.7
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 6.1e-17 91.3 61 78.7
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 6.7e-16 87.8 62 77.4
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 2.0e-15 86.3 60 78.3
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 9.7e-15 84.0 63 74.6
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 4.1e-13 78.6 58 70.7
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 9.1e-13 77.4 75 62.7
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 1.6e-12 76.6 114 47.4
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 1.6e-12 76.6 49 79.6
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.6e-12 76.6 49 79.6
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.6e-12 76.6 49 79.6
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 2.6e-12 75.9 100 51.0
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 3.5e-12 75.5 65 64.6
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 3.5e-12 75.5 56 64.3
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 3.5e-12 75.5 49 69.4
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 3.5e-12 75.5 95 51.6
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 4.5e-12 75.1 84 57.1
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 4.5e-12 75.1 52 73.1
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.5e-12 75.1 49 77.6
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 4.5e-12 75.1 49 79.6
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 4.5e-12 75.1 49 77.6
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 4.5e-12 75.1 79 60.8
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 5.9e-12 74.7 61 68.9
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 5.9e-12 74.7 61 68.9
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 7.7e-12 74.3 60 63.3
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 7.7e-12 74.3 57 68.4
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 1.0e-11 73.9 50 70.0
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.0e-11 73.9 100 50.0
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 2.2e-11 72.8 51 74.5
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 2.9e-11 72.4 82 53.7
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 2.9e-11 72.4 50 74.0
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 3.8e-11 72.0 85 55.3
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 5.0e-11 71.6 114 43.0
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.5e-11 71.2 49 75.5
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 8.5e-11 70.9 55 67.3
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 1.1e-10 70.5 103 50.5
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 1.5e-10 70.1 51 70.6
Peaxi162Scf00202g00010 Petunia axillaris HOM05D006882 ORTHO05D008688 1.5e-10 70.1 47 78.7
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 1.5e-10 70.1 92 47.8
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 2.5e-10 69.3 50 76.0
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 3.2e-10 68.9 73 57.5
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 4.2e-10 68.6 62 66.1
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 5.5e-10 68.2 76 52.6
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 7.2e-10 67.8 81 55.6
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 7.2e-10 67.8 90 46.7
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.4e-10 67.4 86 54.7
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 9.4e-10 67.4 60 58.3
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 9.4e-10 67.4 51 62.7
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 1.2e-09 67.0 60 56.7
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 1.2e-09 67.0 98 43.9
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 1.2e-09 67.0 100 45.0
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.2e-09 67.0 50 66.0
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.2e-09 67.0 117 44.4
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 1.2e-09 67.0 59 61.0
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 1.6e-09 66.6 77 51.9
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.6e-09 66.6 62 64.5
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 1.6e-09 66.6 75 53.3
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 1.6e-09 66.6 108 43.5
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 2.1e-09 66.2 60 56.7
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 2.1e-09 66.2 51 68.6
Peaxi162Scf00271g00524 Petunia axillaris HOM05D006882 ORTHO05D008688 2.1e-09 66.2 106 45.3
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 2.1e-09 66.2 97 49.5
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 2.7e-09 65.9 87 47.1
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.6e-09 65.5 109 48.6
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 3.6e-09 65.5 70 54.3
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 3.6e-09 65.5 57 59.6
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 4.7e-09 65.1 50 66.0
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 4.7e-09 65.1 90 48.9
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 6.1e-09 64.7 95 46.3
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 8.0e-09 64.3 56 57.1
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 8.0e-09 64.3 50 66.0
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 8.0e-09 64.3 46 69.6
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 8.0e-09 64.3 54 61.1
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.0e-08 63.9 83 47.0
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.0e-08 63.9 83 47.0
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 1.0e-08 63.9 78 52.6
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.0e-08 63.9 91 46.2
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.8e-08 63.2 76 52.6
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 1.8e-08 63.2 92 47.8
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.8e-08 63.2 46 63.0
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 3.0e-08 62.4 70 50.0
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 3.0e-08 62.4 70 50.0
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 3.0e-08 62.4 51 60.8
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 3.0e-08 62.4 53 60.4
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 4.0e-08 62.0 51 64.7
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 8.8e-08 60.8 50 62.0
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 1.2e-07 60.5 86 46.5
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 1.5e-07 60.1 85 44.7
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.0e-07 59.7 55 56.4
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 2.6e-07 59.3 50 60.0
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 2.6e-07 59.3 52 65.4
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 3.3e-07 58.9 49 63.3
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 4.4e-07 58.5 84 44.0
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 4.4e-07 58.5 84 44.0
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 4.4e-07 58.5 47 63.8
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 2.2e-06 56.2 60 51.7
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 3.7e-06 55.5 48 64.6
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 6.3e-06 54.7 59 54.2
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 8.2e-06 54.3 57 57.9


User provided reference genes

Program Settings