Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.8e-150 535.8 251 100.0
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 9.7e-149 530.0 251 98.8
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.3e-148 529.6 251 98.0
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.1e-144 516.5 251 95.2
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.1e-144 516.5 251 95.6
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 4.2e-144 514.6 251 96.4
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 1.4e-142 509.6 251 94.0
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 1.7e-121 439.5 251 80.9
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 6.6e-121 437.6 251 78.5
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 1.6e-119 433.0 250 78.4
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 6.2e-119 431.0 251 77.7
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 8.0e-119 430.6 251 77.7
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.1e-118 430.3 251 77.3
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 1.5e-117 426.4 251 77.3
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 3.4e-117 425.2 251 75.7
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.4e-117 425.2 251 75.7
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 3.4e-117 425.2 251 78.1
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 5.8e-117 424.5 249 76.7
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 1.3e-116 423.3 251 76.1
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.9e-116 422.2 251 75.3
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 8.3e-116 420.6 251 75.3
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.4e-115 419.9 251 75.3
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 1.4e-115 419.9 251 75.3
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 2.4e-115 419.1 252 78.2
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 9.2e-115 417.2 251 74.5
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 4.6e-114 414.8 251 74.5
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 1.0e-113 413.7 251 73.7
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 1.3e-113 413.3 251 73.3
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 3.0e-113 412.1 252 75.0
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 4.3e-112 408.3 251 73.7
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 5.6e-112 407.9 251 73.3
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.8e-111 405.6 250 72.4
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 2.8e-111 405.6 238 77.7
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 8.1e-111 404.1 251 72.5
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 1.1e-110 403.7 251 73.3
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.4e-110 403.3 251 74.1
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 6.8e-110 401.0 251 73.7
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 8.9e-110 400.6 251 72.9
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 2.0e-109 399.4 251 72.9
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 2.2e-108 396.0 251 71.3
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 4.9e-108 394.8 251 72.9
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 1.1e-107 393.7 251 72.1
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 1.4e-107 393.3 251 71.3
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 3.2e-107 392.1 255 70.2
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 4.1e-107 391.7 251 71.7
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 7.1e-107 391.0 251 70.5
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 7.1e-107 391.0 251 72.5
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.0e-105 387.1 253 70.8
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 1.0e-105 387.1 251 68.5
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 1.3e-105 386.7 253 70.8
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 1.7e-105 386.3 253 70.4
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 1.7e-105 386.3 251 70.1
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 3.0e-105 385.6 251 70.9
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 3.9e-105 385.2 251 70.1
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 1.5e-104 383.3 253 69.2
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 1.9e-104 382.9 253 69.2
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 4.3e-104 381.7 251 70.9
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 1.2e-103 380.2 251 68.5
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 4.7e-103 378.3 251 69.3
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 2.4e-102 375.9 253 67.6
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 5.2e-102 374.8 251 66.9
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 6.8e-102 374.4 253 68.0
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 6.8e-102 374.4 253 66.0
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 8.9e-102 374.0 251 67.3
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 1.5e-101 373.2 253 67.6
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.5e-101 373.2 251 67.7
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 1.5e-101 373.2 253 67.2
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 2.6e-101 372.5 251 66.9
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 4.4e-101 371.7 251 69.3
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 2.4e-99 365.9 251 66.1
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 5.4e-99 364.8 251 65.3
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 9.3e-99 364.0 251 69.3
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 3.5e-98 362.1 229 72.9
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 3.5e-98 362.1 253 65.6
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 3.0e-97 359.0 250 66.4
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 6.6e-97 357.8 252 65.1
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 1.5e-96 356.7 249 64.7
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 1.4e-94 350.1 247 65.2
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 2.0e-93 346.3 263 62.4
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 2.6e-93 345.9 246 64.2
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 2.6e-93 345.9 248 64.1
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 4.4e-93 345.1 253 63.6
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 1.3e-92 343.6 253 62.5
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 1.3e-92 343.6 253 62.5
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 1.3e-92 343.6 253 62.5
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 1.3e-92 343.6 253 62.5
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 1.7e-92 343.2 253 62.5
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 2.2e-92 342.8 246 65.0
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 3.8e-92 342.0 254 63.0
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 6.4e-92 341.3 253 63.2
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 3.2e-91 339.0 253 62.1
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 5.4e-91 338.2 253 62.5
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 1.2e-90 337.0 253 62.8
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 2.1e-90 336.3 253 61.3
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 1.0e-89 334.0 247 61.1
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 1.0e-89 334.0 253 61.3
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 3.3e-88 328.9 194 75.3
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 3.6e-87 325.5 251 60.6
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 3.1e-86 322.4 238 60.5
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 1.3e-76 290.4 246 56.1
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 7.9e-74 281.2 249 54.2
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 3.0e-73 279.3 248 54.0
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 3.3e-72 275.8 248 54.8
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 9.6e-72 274.2 248 54.4
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 3.1e-70 269.2 251 52.6
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 2.2e-68 263.1 282 53.9
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.2e-66 257.3 154 70.8
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 6.9e-62 241.5 252 45.6
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 4.5e-61 238.8 140 82.1
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 5.9e-61 238.4 268 46.3
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 5.5e-59 231.9 259 49.8
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 5.0e-52 208.8 112 80.4
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 1.1e-40 171.0 100 83.0
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.1e-38 164.5 100 82.0
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 9.1e-30 134.8 154 51.9
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 1.7e-28 130.6 96 64.6
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 6.3e-23 112.1 70 62.9
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.1e-19 101.3 55 70.9
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 3.4e-16 89.7 52 67.3
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 6.6e-12 75.5 45 66.7
Mapoly0033s0071 Marchantia polymorpha HOM05D006599 ORTHO05D008304 1.2e-08 64.7 183 25.7
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 5.4e-06 55.8 110 30.0
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 7.0e-06 55.5 110 30.0


User provided reference genes

Program Settings