Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 2.4e-246 855.5 586 100.0
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 1.2e-237 826.6 595 93.1
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 5.0e-220 768.1 594 91.9
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 5.5e-187 658.3 605 75.4
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 2.0e-176 623.2 605 79.7
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 5.4e-174 615.1 605 73.1
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 3.0e-172 609.4 600 71.7
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.2e-96 358.2 473 58.4
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 5.9e-96 355.9 516 54.1
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 8.0e-93 345.5 528 54.4
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 3.7e-90 336.7 512 58.2
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 1.8e-89 334.3 459 58.8
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 1.6e-88 331.3 524 52.1
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 3.5e-88 330.1 595 48.9
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 3.5e-88 330.1 442 67.0
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 4.5e-88 329.7 549 57.0
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.3e-87 328.2 449 58.4
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 1.7e-87 327.8 533 60.2
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 5.0e-87 326.2 447 58.6
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 1.1e-86 325.1 465 56.3
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 2.5e-86 323.9 464 54.3
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 4.2e-86 323.2 446 58.1
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 2.1e-85 320.9 510 51.0
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 6.1e-85 319.3 447 57.7
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 8.0e-85 318.9 459 58.2
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 1.8e-84 317.8 463 54.6
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 2.3e-84 317.4 544 49.4
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 1.2e-83 315.1 473 58.4
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.8e-82 310.5 473 56.9
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 4.8e-82 309.7 473 56.9
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 1.8e-81 307.8 531 48.2
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 5.3e-81 306.2 494 51.6
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 2.7e-80 303.9 459 59.0
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 4.5e-80 303.1 445 59.8
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 4.5e-80 303.1 522 50.6
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 1.7e-79 301.2 445 58.4
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 2.9e-79 300.4 437 57.4
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 3.8e-79 300.1 416 65.6
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 3.8e-79 300.1 505 50.7
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 5.0e-79 299.7 466 52.6
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 1.9e-78 297.7 467 54.6
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 4.2e-78 296.6 452 53.8
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 5.5e-78 296.2 437 57.7
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 5.5e-78 296.2 461 59.7
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 9.4e-78 295.4 541 48.1
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.2e-77 295.0 444 54.5
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 3.6e-77 293.5 462 58.4
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 8.0e-77 292.4 442 59.5
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 3.0e-76 290.4 452 53.8
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 4.0e-76 290.0 529 42.7
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 6.8e-76 289.3 447 58.8
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 8.8e-76 288.9 442 54.5
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.7e-74 284.6 447 53.7
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 2.2e-74 284.3 453 54.1
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 4.8e-74 283.1 506 44.9
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 8.3e-74 282.3 452 52.7
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 5.4e-73 279.6 383 60.3
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 9.1e-73 278.9 443 57.8
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 2.0e-72 277.7 439 53.8
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 2.3e-71 274.2 452 58.8
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 2.9e-71 273.9 439 53.8
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 3.8e-71 273.5 442 52.3
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 5.0e-71 273.1 407 58.7
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 6.5e-71 272.7 465 54.8
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 8.6e-71 272.3 458 50.4
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 2.5e-70 270.8 442 54.8
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 7.2e-70 269.2 450 59.1
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 1.2e-69 268.5 450 60.0
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 2.1e-69 267.7 483 48.7
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 2.1e-69 267.7 390 55.4
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 6.1e-69 266.2 442 51.6
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 6.8e-68 262.7 405 61.0
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 7.0e-65 252.7 465 51.4
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 2.0e-64 251.1 452 57.7
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 4.5e-64 250.0 486 45.5
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 1.7e-63 248.1 450 56.0
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 2.3e-63 247.7 505 45.1
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 3.8e-63 246.9 448 46.9
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 2.5e-62 244.2 450 55.8
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 3.6e-61 240.4 562 47.7
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 5.2e-60 236.5 425 54.8
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 6.8e-60 236.1 401 53.6
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 2.0e-59 234.6 463 50.1
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 4.1e-57 226.9 450 50.9
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 1.6e-56 224.9 469 54.2
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 2.3e-55 221.1 483 29.6
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 1.1e-52 212.2 544 48.7
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 2.3e-52 211.1 408 50.7
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.6e-51 207.6 460 58.0
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 6.4e-50 203.0 399 34.6
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 6.4e-50 203.0 399 34.6
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 5.0e-47 193.4 576 42.0
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 6.8e-44 183.0 414 49.0
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 1.2e-43 182.2 161 57.1
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 1.2e-43 182.2 161 57.1
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 9.9e-43 179.1 452 46.5
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 9.9e-43 179.1 452 46.5
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 8.9e-36 156.0 180 49.4
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 1.2e-35 155.6 396 48.5
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 6.0e-32 143.3 214 42.1
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 3.0e-31 141.0 162 46.3
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.1e-30 139.0 150 49.3
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 1.8e-28 131.7 148 45.3
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 9.9e-27 125.9 104 64.4
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.5e-11 75.5 111 39.6
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.5e-11 75.5 111 39.6
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.9e-09 68.6 155 27.7
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.1e-08 65.1 145 29.0
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 7.9e-08 63.2 134 28.4
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.3e-07 62.4 141 28.4
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.3e-07 61.6 140 28.6
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 3.9e-07 60.8 140 28.6
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 5.1e-07 60.5 117 30.8
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 6.7e-07 60.1 121 28.1
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 8.7e-07 59.7 165 24.8
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.1e-06 59.3 121 29.8
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 1.1e-06 59.3 121 29.8
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.1e-06 59.3 136 28.7
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.5e-06 58.9 136 28.7
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 3.3e-06 57.8 157 26.1
CARHR072750 Cardamine hirsuta HOM05D006918 ORTHO05D008525 3.3e-06 57.8 153 24.8
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 3.3e-06 57.8 152 27.6
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 4.3e-06 57.4 153 26.1
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 5.6e-06 57.0 121 29.8
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 5.6e-06 57.0 142 26.8
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 5.6e-06 57.0 132 28.0
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 7.4e-06 56.6 121 29.8
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 9.6e-06 56.2 139 28.1


User provided reference genes

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