Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g088510.4 Solanum lycopersicum HOM05D003516 ORTHO05D004068 6.1e-160 567.4 276 100.0
CAN.G206.193 Capsicum annuum HOM05D003516 ORTHO05D004068 4.1e-132 474.9 280 84.3
PGSC0003DMG400001349 Solanum tuberosum HOM05D003516 ORTHO05D004068 3.8e-122 441.8 236 90.3
Nitab4.5_0000565g0040 Nicotiana tabacum HOM05D003516 ORTHO05D004068 6.3e-117 424.5 286 75.5
Nitab4.5_0008573g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 6.3e-117 424.5 289 73.4
Sopen02g033240 Solanum pennellii HOM05D003516 ORTHO05D004068 1.8e-116 422.9 207 97.6
Sopen02g033200 Solanum pennellii HOM05D003516 ORTHO05D004068 1.3e-114 416.8 240 84.6
Solyc02g088490.3 Solanum lycopersicum HOM05D003516 ORTHO05D004068 1.9e-113 412.9 240 84.2
PGSC0003DMG402001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 2.5e-113 412.5 237 84.0
Nitab4.5_0008573g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 3.3e-113 412.1 250 80.4
Nitab4.5_0000565g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 4.3e-113 411.8 250 80.4
Nitab4.5_0003216g0010 Nicotiana tabacum HOM05D003516 ORTHO05D004068 4.7e-112 408.3 286 73.8
PGSC0003DMG401001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.8e-111 406.4 240 83.8
CAN.G206.192 Capsicum annuum HOM05D003516 ORTHO05D004068 8.9e-111 404.1 236 82.6
RcHm_v2.0_Chr2g0166771 Rosa chinensis HOM05D003516 ORTHO05D004068 1.7e-101 373.2 237 73.8
Potri.004G126100 Populus trichocarpa HOM05D003516 ORTHO05D004068 8.3e-101 370.9 235 73.6
Hma1.2p1_0255F.1_g103250 Hydrangea macrophylla HOM05D003516 ORTHO05D004068 2.0e-99 366.3 243 72.8
CSS0008989 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 4.6e-99 365.2 238 73.1
Sabra04G0066900 Salix brachista HOM05D003516 ORTHO05D004068 4.6e-99 365.2 255 68.2
RcHm_v2.0_Chr2g0166761 Rosa chinensis HOM05D003516 ORTHO05D004068 7.8e-99 364.4 237 73.0
FvH4_6g47610 Fragaria vesca HOM05D003516 ORTHO05D004068 1.3e-98 363.6 238 72.7
Manes.01G099500 Manihot esculenta HOM05D003516 ORTHO05D004068 1.3e-98 363.6 237 70.5
FAN05G5016 Fragaria x ananassa HOM05D003516 ORTHO05D004068 1.7e-98 363.2 238 72.3
RcHm_v2.0_Chr2g0166731 Rosa chinensis HOM05D003516 ORTHO05D004068 1.9e-97 359.8 237 71.7
TWI34G1153 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 1.6e-96 356.7 237 70.5
SalBow1G1829 Salvia bowleyana HOM05D003516 ORTHO05D004068 2.1e-96 356.3 236 70.8
Lj1g0021677 Lotus japonicus HOM05D003516 ORTHO05D004068 2.8e-96 355.9 241 71.0
Atru.chr2.3146 Acer truncatum HOM05D003516 ORTHO05D004068 8.1e-96 354.4 235 71.5
FAN09G4649 Fragaria x ananassa HOM05D003516 ORTHO05D004068 1.1e-95 354.0 248 69.0
arahy.Tifrunner.gnm1.ann1.0J6LH7 Arachis hypogaea HOM05D003516 ORTHO05D004068 1.8e-95 353.2 237 71.3
TWI34G0121 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 3.1e-95 352.4 237 69.6
Thecc.04G089600 Theobroma cacao HOM05D003516 ORTHO05D004068 4.0e-95 352.1 239 70.3
Actinidia01964 Actinidia chinensis HOM05D003516 ORTHO05D004068 6.8e-95 351.3 233 69.1
Actinidia01972 Actinidia chinensis HOM05D003516 ORTHO05D004068 1.5e-94 350.1 233 69.1
MSTRG.3024 Avicennia marina HOM05D003516 ORTHO05D004068 1.5e-94 350.1 259 65.3
BraA04t16875Z Brassica rapa HOM05D003516 ORTHO05D004068 1.5e-94 350.1 241 66.8
Lalb_Chr17g0337081 Lupinus albus HOM05D003516 ORTHO05D004068 2.0e-94 349.7 236 69.5
BcaB06g27324 Brassica carinata HOM05D003516 ORTHO05D004068 4.4e-94 348.6 242 65.7
Nn4g23324 Nelumbo nucifera HOM05D003516 ORTHO05D004068 4.4e-94 348.6 238 69.7
QL02p039347 Quercus lobata HOM05D003516 ORTHO05D004068 4.4e-94 348.6 234 71.8
Sp7g02570 Schrenkiella parvula HOM05D003516 ORTHO05D004068 7.5e-94 347.8 241 66.0
vmacro05670 Vaccinium macrocarpon HOM05D003516 ORTHO05D004068 9.9e-94 347.4 240 68.3
FvH4_6g47700 Fragaria vesca HOM05D003516 ORTHO05D004068 1.3e-93 347.1 238 69.3
FAN14G0784 Fragaria x ananassa HOM05D003516 ORTHO05D004068 1.3e-93 347.1 249 67.5
Rhsim10G0034300 Rhododendron simsii HOM05D003516 ORTHO05D004068 1.3e-93 347.1 245 66.9
CARHR262950 Cardamine hirsuta HOM05D003516 ORTHO05D004068 1.7e-93 346.7 241 66.8
Glyma.08G241300 Glycine max HOM05D003516 ORTHO05D004068 2.2e-93 346.3 233 70.8
BcaB06g27298 Brassica carinata HOM05D003516 ORTHO05D004068 2.9e-93 345.9 241 66.4
BolC4t26158H Brassica oleracea HOM05D003516 ORTHO05D004068 2.9e-93 345.9 241 66.4
A04p12100 Brassica napus HOM05D003516 ORTHO05D004068 3.7e-93 345.5 243 66.3
MD09G1060600 Malus domestica HOM05D003516 ORTHO05D004068 3.7e-93 345.5 235 69.4
Lj4C115T4 Lonicera japonica HOM05D003516 ORTHO05D004068 4.9e-93 345.1 221 74.2
Thhalv10027760m.g Eutrema salsugineum HOM05D003516 ORTHO05D004068 6.4e-93 344.7 241 66.0
Carub.0007s3653 Capsella rubella HOM05D003516 ORTHO05D004068 8.3e-93 344.4 241 65.1
Cfa007618 Carpinus fangiana HOM05D003516 ORTHO05D004068 8.3e-93 344.4 234 69.2
FvH4_6g47650 Fragaria vesca HOM05D003516 ORTHO05D004068 8.3e-93 344.4 238 69.7
TAR371G0601 Trochodendron aralioides HOM05D003516 ORTHO05D004068 8.3e-93 344.4 243 65.8
Duzib264G1026 Durio zibethinus HOM05D003516 ORTHO05D004068 1.1e-92 344.0 241 66.8
CiPaw.03G092000 Carya illinoinensis HOM05D003516 ORTHO05D004068 1.9e-92 343.2 238 68.5
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 1.9e-92 343.2 245 67.3
C04p45730 Brassica napus HOM05D003516 ORTHO05D004068 3.2e-92 342.4 241 66.0
PGR056G0004 Punica granatum HOM05D003516 ORTHO05D004068 4.1e-92 342.0 237 69.2
AL7G50920 Arabidopsis lyrata HOM05D003516 ORTHO05D004068 5.4e-92 341.7 241 64.7
Phvul.008G040100 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 5.4e-92 341.7 233 69.5
Gohir.A05G369500 Gossypium hirsutum HOM05D003516 ORTHO05D004068 7.1e-92 341.3 240 66.7
AT5G39410 Arabidopsis thaliana HOM05D003516 ORTHO05D004068 9.2e-92 340.9 242 65.7
MSTRG.23906 Avicennia marina HOM05D003516 ORTHO05D004068 1.2e-91 340.5 236 67.8
Prupe.3G260300 Prunus persica HOM05D003516 ORTHO05D004068 1.2e-91 340.5 240 68.8
DCAR_011066 Daucus carota HOM05D003516 ORTHO05D004068 2.1e-91 339.7 225 71.6
Eucgr.J01366 Eucalyptus grandis HOM05D003516 ORTHO05D004068 2.1e-91 339.7 238 66.4
Lsat_1_v5_gn_2_87981 Lactuca sativa HOM05D003516 ORTHO05D004068 2.1e-91 339.7 235 69.4
Peaxi162Scf00166g00944 Petunia axillaris HOM05D003516 ORTHO05D004068 2.1e-91 339.7 219 74.9
unitig_744.g24003 Utricularia gibba HOM05D003516 ORTHO05D004068 2.1e-91 339.7 251 63.3
VMungo1383G2485 Vigna mungo HOM05D003516 ORTHO05D004068 2.7e-91 339.3 233 69.1
Gorai.012G051000 Gossypium raimondii HOM05D003516 ORTHO05D004068 3.5e-91 339.0 240 66.2
Ciclev10011701m.g Citrus clementina HOM05D003516 ORTHO05D004068 7.8e-91 337.8 233 70.0
HanXRQChr14g0448681 Helianthus annuus HOM05D003516 ORTHO05D004068 7.8e-91 337.8 235 67.2
ECA238G2285 Erigeron canadensis HOM05D003516 ORTHO05D004068 1.0e-90 337.4 235 68.9
Gohir.D04G045800 Gossypium hirsutum HOM05D003516 ORTHO05D004068 1.7e-90 336.7 240 65.8
Ah.12g062520 Amaranthus hybridus HOM05D003516 ORTHO05D004068 2.3e-90 336.3 237 67.1
AUR62018134 Chenopodium quinoa HOM05D003516 ORTHO05D004068 3.9e-90 335.5 236 69.1
Medtr7g011890 Medicago truncatula HOM05D003516 ORTHO05D004068 6.6e-90 334.7 233 67.4
SGA_v2.0_scaffold4G02421 Striga asiatica HOM05D003516 ORTHO05D004068 6.6e-90 334.7 236 66.1
Aa31LG9G16580 Aethionema arabicum HOM05D003516 ORTHO05D004068 8.6e-90 334.3 234 67.5
Sc14g0006110 Simmondsia chinensis HOM05D003516 ORTHO05D004068 8.6e-90 334.3 265 62.6
ECA238G0029 Erigeron canadensis HOM05D003516 ORTHO05D004068 3.3e-89 332.4 235 67.7
TAR371G1100 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.2e-88 330.5 237 65.0
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.6e-88 330.1 235 64.7
MELO3C009836.2 Cucumis melo HOM05D003516 ORTHO05D004068 3.6e-88 328.9 235 66.4
Hund15565 Selenicereus undatus HOM05D003516 ORTHO05D004068 8.1e-88 327.8 243 65.4
Lsat_1_v5_gn_2_88001 Lactuca sativa HOM05D003516 ORTHO05D004068 1.1e-87 327.4 234 66.7
Ca_04330_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 5.2e-87 325.1 236 67.4
CsaV3_3G041030 Cucumis sativus L. HOM05D003516 ORTHO05D004068 1.5e-86 323.6 241 63.9
THA.LOC104823897 Tarenaya hassleriana HOM05D003516 ORTHO05D004068 1.5e-86 323.6 241 62.7
ClCG10G015460 Citrullus lanatus HOM05D003516 ORTHO05D004068 2.6e-86 322.8 237 65.0
Migut.H00662 Erythranthe guttata HOM05D003516 ORTHO05D004068 2.6e-86 322.8 240 65.0
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.3e-85 320.5 238 65.1
CDE04G1400 Ceratophyllum demersum HOM05D003516 ORTHO05D004068 3.8e-85 318.9 233 65.7
MBI19_g41331_MAGBIO Magnolia biondii HOM05D003516 ORTHO05D004068 4.9e-85 318.5 235 64.3
PSO675G4642 Papaver somniferum HOM05D003516 ORTHO05D004068 6.4e-85 318.2 238 65.5
PSO541G0811 Papaver somniferum HOM05D003516 ORTHO05D004068 8.4e-85 317.8 239 65.7
Psat1g105360 Pisum sativum HOM05D003516 ORTHO05D004068 4.1e-84 315.5 215 72.1
HPP92_020419 Vanilla planifolia HOM05D003516 ORTHO05D004068 7.1e-84 314.7 236 62.3
Sed0002556 Sechium edule HOM05D003516 ORTHO05D004068 1.6e-83 313.5 235 63.0
Lalb_Chr02g0159071 Lupinus albus HOM05D003516 ORTHO05D004068 2.1e-83 313.2 235 62.1
arahy.Tifrunner.gnm1.ann1.BNNE9K Arachis hypogaea HOM05D003516 ORTHO05D004068 1.0e-82 310.8 244 60.2
EL10Ac2g03040 Beta vulgaris HOM05D003516 ORTHO05D004068 2.3e-82 309.7 216 65.7
MELO3C009835.2 Cucumis melo HOM05D003516 ORTHO05D004068 1.1e-81 307.4 237 62.4
HanXRQChr14g0448661 Helianthus annuus HOM05D003516 ORTHO05D004068 5.6e-81 305.1 236 61.9
HPP92_023623 Vanilla planifolia HOM05D003516 ORTHO05D004068 1.2e-80 303.9 232 60.8
Nn4g23326 Nelumbo nucifera HOM05D003516 ORTHO05D004068 4.7e-80 302.0 238 62.6
Aqoxy3G03552 Aquilegia oxysepala HOM05D003516 ORTHO05D004068 1.1e-79 300.8 234 62.0
ATR0111G016 Amborella trichopoda HOM05D003516 ORTHO05D004068 1.4e-79 300.4 241 59.3
Lsat_1_v5_gn_2_88041 Lactuca sativa HOM05D003516 ORTHO05D004068 1.4e-79 300.4 233 62.7
Medtr4g094268 Medicago truncatula HOM05D003516 ORTHO05D004068 5.2e-79 298.5 234 58.5
Zm00001eb326640 Zea mays HOM05D003516 ORTHO05D004068 2.0e-78 296.6 243 59.7
Glyma.13G059300 Glycine max HOM05D003516 ORTHO05D004068 2.6e-78 296.2 232 61.6
VMungo0464G1139 Vigna mungo HOM05D003516 ORTHO05D004068 2.6e-78 296.2 236 60.2
Phvul.004G033000 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 4.4e-78 295.4 232 60.8
HanXRQChr14g0448671 Helianthus annuus HOM05D003516 ORTHO05D004068 2.9e-77 292.7 234 59.8
Psat1g069160 Pisum sativum HOM05D003516 ORTHO05D004068 4.9e-77 292.0 237 57.0
TPR.G26192 Trifolium pratense HOM05D003516 ORTHO05D004068 8.4e-77 291.2 240 57.9
Psat7g019480 Pisum sativum HOM05D003516 ORTHO05D004068 4.2e-76 288.9 225 65.3
Lj2g0008898 Lotus japonicus HOM05D003516 ORTHO05D004068 7.1e-76 288.1 241 57.3
Dinv11492 Davidia involucrata HOM05D003516 ORTHO05D004068 9.3e-76 287.7 235 63.4
TAR371G1088 Trochodendron aralioides HOM05D003516 ORTHO05D004068 4.6e-75 285.4 209 65.1
ECA238G1443 Erigeron canadensis HOM05D003516 ORTHO05D004068 3.0e-74 282.7 253 56.5
arahy.Tifrunner.gnm1.ann1.3ST4SV Arachis hypogaea HOM05D003516 ORTHO05D004068 6.6e-74 281.6 233 58.8
SEGI_01701 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.5e-73 280.4 233 57.9
Ca_04865_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 2.5e-73 279.6 239 56.1
SalBow1G1268 Salvia bowleyana HOM05D003516 ORTHO05D004068 4.3e-73 278.9 236 58.5
Psat1g105320 Pisum sativum HOM05D003516 ORTHO05D004068 5.6e-73 278.5 182 73.6
HanXRQChr17g0546741 Helianthus annuus HOM05D003516 ORTHO05D004068 9.6e-73 277.7 284 53.5
AUR62034468 Chenopodium quinoa HOM05D003516 ORTHO05D004068 6.2e-72 275.0 237 59.5
SEGI_26660 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 6.2e-72 275.0 233 56.7
FAN14G3818 Fragaria x ananassa HOM05D003516 ORTHO05D004068 2.6e-70 269.6 249 55.8
Nn4g23325 Nelumbo nucifera HOM05D003516 ORTHO05D004068 6.4e-69 265.0 173 71.1
SEGI_25923 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 9.3e-68 261.2 233 55.4
Pp3c7_23970 Physcomitrium patens HOM05D003516 ORTHO05D004068 4.6e-67 258.8 229 55.9
Pp3c2_35640 Physcomitrium patens HOM05D003516 ORTHO05D004068 1.8e-63 246.9 228 54.4
CsaV3_3G041020 Cucumis sativus L. HOM05D003516 ORTHO05D004068 9.0e-63 244.6 235 54.0
SMO364G0897 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 1.5e-62 243.8 234 53.4
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 7.1e-60 235.0 200 58.0
AagrBONN_evm.TU.Sc2ySwM_228.5734 Anthoceros agrestis HOM05D003516 ORTHO05D004068 1.6e-59 233.8 221 52.9
Mapoly0061s0022 Marchantia polymorpha HOM05D003516 ORTHO05D004068 3.0e-58 229.6 231 50.6
PGSC0003DMG400001348 Solanum tuberosum HOM05D003516 ORTHO05D004068 4.8e-56 222.2 115 93.0
Nitab4.5_0000053g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 2.4e-55 219.9 127 80.3
AUR62034473 Chenopodium quinoa HOM05D003516 ORTHO05D004068 1.2e-54 217.6 162 63.0
AagrBONN_evm.TU.Sc2ySwM_369.232 Anthoceros agrestis HOM05D003516 ORTHO05D004068 4.5e-54 215.7 229 49.8
AagrBONN_evm.TU.Sc2ySwM_344.722 Anthoceros agrestis HOM05D003516 ORTHO05D004068 1.7e-53 213.8 221 49.8
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 7.7e-46 188.3 128 69.5
Cc07_g03810 Coffea canephora HOM05D003516 ORTHO05D004068 4.3e-41 172.6 113 73.5
CsaV3_3G041010 Cucumis sativus L. HOM05D003516 ORTHO05D004068 1.4e-39 167.5 133 58.6
COL.COLO4_12254 Corchorus olitorius HOM05D003516 ORTHO05D004068 6.9e-39 165.2 137 60.6
SalBow8G2541 Salvia bowleyana HOM05D003516 ORTHO05D004068 3.4e-38 162.9 206 44.7
PRCOL_00005991 Prasinoderma coloniale HOM05D003516 ORTHO05D004068 7.7e-38 161.8 227 40.5
Lalb_Chr17g0337111 Lupinus albus HOM05D003516 ORTHO05D004068 2.9e-37 159.8 105 72.4
Cpa.g.sc14.137 Carica papaya HOM05D003516 ORTHO05D004068 3.2e-36 156.4 116 65.5
Psat3g198560 Pisum sativum HOM05D003516 ORTHO05D004068 9.4e-36 154.8 116 66.4
COL.COLO4_12253 Corchorus olitorius HOM05D003516 ORTHO05D004068 1.1e-33 147.9 111 63.1
SalBow1G7636 Salvia bowleyana HOM05D003516 ORTHO05D004068 7.4e-33 145.2 113 63.7
HPP92_023641 Vanilla planifolia HOM05D003516 ORTHO05D004068 1.5e-30 137.5 115 58.3
SEGI_03289 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 5.9e-30 135.6 118 50.0
Lsat_1_v5_gn_4_89441 Lactuca sativa HOM05D003516 ORTHO05D004068 1.2e-27 127.9 102 57.8
Lsat_1_v5_gn_3_33981 Lactuca sativa HOM05D003516 ORTHO05D004068 2.7e-27 126.7 82 67.1
RcHm_v2.0_Chr4g0415091 Rosa chinensis HOM05D003516 ORTHO05D004068 3.0e-26 123.2 139 48.9
Cre06.g277100 Chlamydomonas reinhardtii HOM05D003516 ORTHO05D004068 1.0e-21 108.2 228 31.6
Lsat_1_v5_gn_4_58340 Lactuca sativa HOM05D003516 ORTHO05D004068 1.7e-21 107.5 104 53.8
Lsat_1_v5_gn_7_15281 Lactuca sativa HOM05D003516 ORTHO05D004068 2.2e-21 107.1 82 63.4
Cfa022187 Carpinus fangiana HOM05D003516 ORTHO05D004068 1.9e-20 104.0 187 33.2
MCO12G151 Micromonas commoda HOM05D003516 ORTHO05D004068 3.6e-19 99.8 162 38.3
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 3.6e-19 99.8 165 32.7
Lsat_1_v5_gn_3_88480 Lactuca sativa HOM05D003516 ORTHO05D004068 1.1e-15 88.2 104 47.1
MCO15G445 Micromonas commoda HOM05D003516 ORTHO05D004068 2.9e-13 80.1 190 28.9
AUR62043822 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.5e-12 77.8 50 74.0
CBR_g38904 Chara braunii HOM05D021006 ORTHO05D024937 2.5e-12 77.0 201 27.4
CBR_g38900 Chara braunii HOM05D021006 ORTHO05D024937 2.1e-11 73.9 161 26.7
Psat3g198720 Pisum sativum HOM05D003516 ORTHO05D004068 2.7e-11 73.6 58 62.1
MCO13G548 Micromonas commoda HOM05D003516 ORTHO05D004068 3.0e-10 70.1 89 34.8
Cre16.g678325 Chlamydomonas reinhardtii HOM05D003516 ORTHO05D004068 3.4e-09 66.6 112 33.0
GSVIVG01011482001 Vitis vinifera HOM05D003516 ORTHO05D004068 3.4e-09 66.6 51 62.7
SMO364G0931 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 7.7e-06 55.5 59 50.8


User provided reference genes

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