Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 7.2e-19 96.3 50 100.0
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 7.2e-19 96.3 50 100.0
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.3e-15 85.5 50 88.0
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.5e-11 70.1 50 74.0
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.5e-11 70.1 50 74.0
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 5.5e-11 70.1 50 74.0
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 1.6e-10 68.6 48 75.0
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 1.6e-10 68.6 48 72.9
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 3.6e-10 67.4 48 72.9
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 1.0e-09 65.9 48 66.7
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 1.8e-09 65.1 50 70.0
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 1.8e-09 65.1 50 70.0
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 1.8e-09 65.1 48 68.8
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 2.3e-09 64.7 48 72.9
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 3.0e-09 64.3 48 70.8
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 3.0e-09 64.3 46 65.2
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 3.9e-09 63.9 48 68.8
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 5.1e-09 63.5 50 68.0
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 5.1e-09 63.5 50 68.0
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 5.1e-09 63.5 50 68.0
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 5.1e-09 63.5 50 68.0
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 6.7e-09 63.2 48 66.7
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 8.8e-09 62.8 50 66.0
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 1.1e-08 62.4 50 58.0
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 1.1e-08 62.4 50 66.0
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 1.5e-08 62.0 50 66.0
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 1.5e-08 62.0 48 66.7
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 2.0e-08 61.6 50 66.0
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 2.0e-08 61.6 50 66.0
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 2.0e-08 61.6 48 64.6
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 2.6e-08 61.2 50 64.0
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 2.6e-08 61.2 50 64.0
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 2.6e-08 61.2 50 64.0
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 3.3e-08 60.8 50 64.0
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.3e-08 60.8 48 66.7
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 4.4e-08 60.5 50 64.0
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 4.4e-08 60.5 50 64.0
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 5.7e-08 60.1 50 64.0
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 5.7e-08 60.1 50 64.0
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 5.7e-08 60.1 48 62.5
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 7.4e-08 59.7 50 62.0
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 7.4e-08 59.7 48 62.5
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 7.4e-08 59.7 50 60.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 1.3e-07 58.9 50 62.0
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 1.7e-07 58.5 50 64.0
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 1.7e-07 58.5 47 68.1
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 2.2e-07 58.2 50 60.0
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 2.2e-07 58.2 48 60.4
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 2.2e-07 58.2 48 60.4
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 2.8e-07 57.8 45 62.2
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 4.8e-07 57.0 50 60.0
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 4.8e-07 57.0 48 58.3
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 4.8e-07 57.0 48 64.6
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 4.8e-07 57.0 48 64.6
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 8.2e-07 56.2 44 65.9
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 8.2e-07 56.2 50 62.0
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 8.2e-07 56.2 45 57.8
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 2.4e-06 54.7 44 63.6
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 2.4e-06 54.7 47 63.8
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 7.0e-06 53.1 42 61.9
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 9.1e-06 52.8 48 58.3
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 9.1e-06 52.8 43 58.1
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 9.1e-06 52.8 43 58.1
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 9.1e-06 52.8 43 58.1


User provided reference genes

Program Settings