Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 3.2e-292 1007.7 497 100.0
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 6.4e-285 983.4 497 97.4
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 8.0e-211 737.3 500 73.6
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 7.3e-188 661.0 518 67.2
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 1.7e-168 596.7 567 58.6
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 4.2e-151 538.9 289 92.0
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 7.1e-151 538.1 484 56.8
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 2.6e-145 519.6 483 55.7
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 2.2e-144 516.5 490 54.9
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 4.9e-144 515.4 482 54.4
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 4.2e-143 512.3 496 54.2
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 3.0e-141 506.1 492 54.1
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 5.1e-141 505.4 493 52.3
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 1.5e-140 503.8 485 54.4
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 2.5e-140 503.1 489 53.8
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 1.6e-139 500.4 496 53.6
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 4.8e-139 498.8 500 51.8
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 8.1e-139 498.0 483 53.4
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 1.4e-138 497.3 485 53.0
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 6.9e-138 495.0 481 54.5
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 2.2e-136 490.0 496 51.0
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 8.4e-136 488.0 488 51.2
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 8.4e-136 488.0 476 54.0
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 3.2e-135 486.1 495 52.3
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 2.7e-134 483.0 493 51.9
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 7.9e-134 481.5 496 52.2
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 1.0e-133 481.1 486 50.8
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 3.3e-132 476.1 486 50.0
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 3.3e-132 476.1 497 51.5
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 6.2e-131 471.9 496 51.2
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 2.4e-130 469.9 496 51.0
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 2.4e-130 469.9 489 50.9
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 2.4e-130 469.9 561 47.8
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 4.0e-130 469.2 504 51.4
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 4.0e-130 469.2 486 50.4
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.5e-129 467.2 504 51.2
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 2.0e-129 466.8 503 51.1
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 2.9e-128 463.0 497 49.7
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 4.9e-128 462.2 496 51.0
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 4.9e-128 462.2 494 48.6
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 8.4e-128 461.5 537 47.5
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 3.2e-127 459.5 454 53.1
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 3.2e-127 459.5 490 51.2
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 4.2e-127 459.1 506 50.2
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 9.3e-127 458.0 471 49.5
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 1.6e-126 457.2 495 48.3
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 2.1e-126 456.8 588 46.4
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 6.0e-126 455.3 506 50.8
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 7.9e-126 454.9 488 48.2
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 6.7e-125 451.8 489 51.3
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 1.5e-124 450.7 500 49.6
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 6.9e-122 441.8 487 49.9
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 2.9e-120 436.4 507 47.7
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 6.5e-120 435.3 490 48.8
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 1.1e-119 434.5 490 48.8
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 1.1e-119 434.5 498 47.0
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 9.3e-119 431.4 480 49.4
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 1.6e-118 430.6 505 49.1
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 6.1e-118 428.7 480 47.5
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 1.3e-117 427.6 487 48.5
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.0e-117 426.4 459 51.2
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 1.1e-116 424.5 485 46.6
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 3.3e-116 422.9 498 47.0
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 9.1e-114 414.8 353 58.4
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 2.9e-112 409.8 485 47.6
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 5.0e-112 409.1 468 46.8
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 5.0e-112 409.1 489 46.8
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.9e-111 407.1 394 54.3
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 1.4e-109 401.0 477 45.7
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 4.1e-106 389.4 581 41.7
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 2.9e-104 383.3 498 43.4
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 1.2e-102 377.9 366 55.2
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 2.7e-102 376.7 460 46.1
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 4.7e-102 375.9 460 46.1
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 2.4e-98 363.6 491 45.0
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 7.7e-97 358.6 397 47.1
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.0e-96 358.2 452 45.4
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 3.2e-95 353.2 502 41.8
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 8.0e-94 348.6 427 45.0
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 3.3e-92 343.2 346 55.5
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 4.5e-89 332.8 503 42.1
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 1.5e-87 327.8 406 47.5
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 4.2e-87 326.2 497 40.6
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 2.8e-83 313.5 522 38.9
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 7.2e-79 298.9 324 50.0
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 4.3e-71 273.1 363 45.7
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 9.5e-71 271.9 515 36.1
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 6.8e-61 239.2 486 35.2
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 4.6e-57 226.5 220 55.9
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 2.5e-55 220.7 434 33.6
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 1.3e-43 181.8 244 45.5
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 2.3e-40 171.0 188 49.5
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 2.5e-31 141.0 182 46.2
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 3.8e-27 127.1 180 36.7
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 1.1e-21 109.0 137 47.4
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 3.8e-19 100.5 120 41.7
Medtr6g011510 Medicago truncatula HOM05D007272 ORTHO05D009305 9.3e-18 95.9 128 43.0
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 3.3e-15 87.4 71 59.2
CDE04G1434 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 7.4e-15 86.3 127 39.4
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.4e-13 82.0 172 36.0
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.4e-13 82.0 172 36.0
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 2.4e-13 81.3 139 37.4
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 3.4e-12 77.4 156 36.5
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 1.7e-11 75.1 72 51.4
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 4.9e-11 73.6 115 44.3
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 2.1e-09 68.2 60 56.7
Dinv33460 Davidia involucrata HOM05D007272 ORTHO05D010159 2.1e-09 68.2 51 54.9
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 3.5e-09 67.4 86 39.5
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 4.6e-09 67.0 180 30.6
FAN19G2836 Fragaria x ananassa HOM05D007272 ORTHO05D045475 8.2e-06 56.2 38 65.8


User provided reference genes

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