Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 2.1e-154 548.9 264 100.0
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 1.2e-152 543.1 264 98.9
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 2.2e-151 538.9 264 97.7
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 6.9e-129 464.2 264 85.2
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.4e-126 456.4 263 83.7
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 9.0e-121 437.2 248 84.3
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.8e-105 386.3 252 75.4
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 3.0e-92 342.4 233 67.4
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 7.0e-89 331.3 256 63.7
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 1.6e-88 330.1 231 66.2
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.2e-87 326.2 234 65.8
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 4.2e-86 322.0 243 63.0
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 3.6e-85 318.9 239 62.8
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 1.0e-84 317.4 240 65.0
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 1.4e-84 317.0 238 64.7
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 2.3e-84 316.2 243 60.9
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 7.5e-83 311.2 250 60.0
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 5.4e-81 305.1 235 61.3
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 4.5e-80 302.0 241 60.2
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 1.1e-78 297.4 231 62.3
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 1.9e-78 296.6 243 58.8
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 5.6e-78 295.0 232 60.8
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 2.8e-77 292.7 224 62.5
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 1.0e-76 290.8 231 62.8
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 1.4e-76 290.4 231 61.5
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 1.8e-76 290.0 231 60.6
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 4.0e-76 288.9 237 60.8
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.6e-75 286.2 271 54.2
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 3.7e-74 282.3 233 61.4
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 6.6e-71 271.6 255 53.7
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 8.6e-71 271.2 242 54.5
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 5.2e-68 261.9 235 57.9
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 7.5e-67 258.1 235 58.7
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 2.9e-66 256.1 239 55.2
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 3.7e-66 255.8 239 54.0
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 1.1e-65 254.2 232 55.6
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 7.8e-64 248.1 234 55.6
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 1.0e-63 247.7 232 54.7
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 3.0e-63 246.1 241 53.9
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 1.1e-62 244.2 240 54.2
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 1.9e-62 243.4 232 54.3
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 3.3e-62 242.7 232 55.2
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 5.6e-62 241.9 229 56.8
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 7.3e-62 241.5 231 54.5
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 3.6e-61 239.2 241 51.5
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 1.1e-60 237.7 235 54.5
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 3.1e-60 236.1 238 52.1
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 5.2e-60 235.3 245 50.6
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 6.8e-60 235.0 241 50.2
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 1.5e-59 233.8 236 52.5
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 2.6e-59 233.0 241 49.4
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 3.4e-59 232.6 233 52.8
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 6.4e-58 228.4 230 53.9
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 1.1e-57 227.6 236 51.7
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 1.9e-57 226.9 232 47.8
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 5.4e-57 225.3 235 52.3
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 1.2e-56 224.2 237 50.6
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 4.6e-56 222.2 244 48.4
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 4.6e-56 222.2 240 50.0
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 3.9e-55 219.2 237 49.8
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 3.9e-55 219.2 237 49.8
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 3.9e-55 219.2 231 48.5
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 5.1e-55 218.8 237 48.5
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 6.6e-55 218.4 231 48.5
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 1.5e-54 217.2 235 47.7
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.9e-54 216.9 233 48.1
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 3.3e-54 216.1 238 49.2
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 3.3e-54 216.1 227 50.7
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 4.3e-54 215.7 237 49.4
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 5.6e-54 215.3 236 48.7
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 5.6e-54 215.3 230 49.6
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 7.3e-54 214.9 246 49.2
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 2.1e-53 213.4 243 47.7
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 4.7e-53 212.2 231 47.2
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 6.2e-53 211.8 231 49.4
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 1.8e-52 210.3 230 46.5
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 3.1e-52 209.5 267 43.4
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 5.2e-52 208.8 241 46.5
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 2.0e-51 206.8 235 48.1
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 3.4e-51 206.1 237 46.8
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 5.8e-51 205.3 238 47.5
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 7.6e-51 204.9 235 46.0
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 2.3e-47 193.4 289 38.1
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 7.3e-46 188.3 154 55.8
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 1.6e-45 187.2 291 40.2
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 6.2e-45 185.3 246 43.1
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 3.1e-44 183.0 164 53.7
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.5e-43 180.6 138 64.5
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 2.0e-43 180.3 246 42.7
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.2e-42 176.8 138 62.3
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 2.1e-37 160.2 239 41.0
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 3.1e-36 156.4 358 30.2
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 4.0e-36 156.0 238 40.3
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 4.9e-34 149.1 200 47.0
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 5.4e-33 145.6 96 74.0
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 3.9e-31 139.4 125 55.2
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.1e-30 137.9 171 46.2
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 4.8e-29 132.5 99 59.6
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 9.9e-27 124.8 147 43.5
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.3e-23 113.6 143 42.7
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 3.3e-22 109.8 190 35.8
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 1.8e-20 104.0 95 54.7
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.5e-14 83.6 127 37.8
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 1.2e-11 74.7 234 25.2
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 4.5e-11 72.8 256 27.0
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 1.7e-10 70.9 48 68.8
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.2e-08 64.7 275 24.0
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 7.9e-08 62.0 268 23.1
Cpa.g.sc28.27 Carica papaya HOM05D007273 ORTHO05D009230 7.4e-06 55.5 58 48.3


User provided reference genes

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